Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0498 ATGGCCGTCGAAACAAACCAAACAAACGAGTTCATTTTCCGTTCGAAGCTTCCCGACATTCACATTCCCAATTACCTTCCACTCCATGAATACGTTTTTCAAAACCAGGCCAAATTCGGCTCCCGCCCCTGTTTGATCGACGGCGCCACCGGCCACGTTTACTCATACGACGACGTTCAGTTAACGTCCCGTCGTGTCGCCAGTGGCCTTCACAACCTTGGAATTAAGAAGGGCGATGTTGTCATGAATTTACTTCCCAACTCGCCGGAGTTCGTCTTCACCTTCCTCGGCGCGTCGTACCGCGGAGCCATCATGACGGCAGCGAACCCGTTTTACACGGCGGTGGAAATTGCCAAACAGGCCAAAGCCGCCAATGCGAAATTGATTGTCACGATGGCTTGCTTTTACGATCGGGTTAAGGATTTGGCTGAAAACGGAGTGAAAATCGTGTGTGTTGATTTTACTGTTGAGGGTTGTTTGCATTTCTCTGTTTTGAGTGGGGCTGATGAATCCCACGCGCCGCCGGTGGATTTCGACTCCGACGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGCTTGCCGAAGGGTGTTATGTTGACTCATAAAGGGTTAATCACGAGCGTCGCTCAACAAATCGACGGCCAAAATCCGAACCTGTATTACCACGGCGGTGACGTCATCCTCTGTGTGTTGCCGTTTTTTCACATCTATTCACTCAATTCGATTTTGCTGTGTGGGCTACGCGCCGGCGCTGCGATTTTGATAATGCAGAAATTCGACATCGTTTCGCTTTTGCAATTGGTTGAGAAGTACAGAGTTTCGATCATGCCGATTGTGCCGCCTATTTTATTGGCCATCGCTAAATCGCCGGATTTTGAGAAGTACGACGTGTCGTCGGTGAGGGTATTGAAATCCGGGGGAGCGCCGCTGGGGAAAGAGCTAGAAGACGCCGTGAGGGAGAAATTTCCAGCGGCGGTTCTCGGGCAGGGTTACGGAATGACCGAGGCCGGTCCGGTTCTGACCATGAGTTTGGCCTTTGCGAAAGAACCGTTTCCAGTGAAAGCCGGAGCCTGCGGGACGGTGGTCCGCAATGCAGAGATGAAGATTGTGGACCCGGAAACCGGCGCCTCATTGCCGGCGAATTCCGCGGGAGAGATTTGTATTAGAGGAGATCAAATCATGAAGGGGTATTTGAATGATTTGGAGTCCACGAAGAGGACTGTTGATAAAGAAGGATGGCTTCACACCGGCGACATCGGCTTCATCGATGACGACGACGAGTTATTCATCGTCGACCGACTTAAAGAACTAATAAAATTCAAGGCGTTTCAGGTGGCGCCCGCCGAGCTCGAGGCCCTTCTTATCACTCACCCCAAATTATCTGATGCTGCTGTCATTGGTATGCCGGACGAGCAGGCCGGAGAAGTGCCGGTGGCGTTTGTGGTGAAGGCGAACGGCGGCGCAATGACAGAAGAAGATGTAAAACAATTCATATCAAAACAAGTGGTATTTTACAAAAGATTAAAACGAGTGTTTTTCGTAAACACTATTCCAAAGGCTCCATCTGGCAAAATCCTCAGAAAGGAACTAAGAGCAAAACTGGCTTCTGGTGCTTACAATTAA 1629 50.71 MAVETNQTNEFIFRSKLPDIHIPNYLPLHEYVFQNQAKFGSRPCLIDGATGHVYSYDDVQLTSRRVASGLHNLGIKKGDVVMNLLPNSPEFVFTFLGASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFTVEGCLHFSVLSGADESHAPPVDFDSDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQIDGQNPNLYYHGGDVILCVLPFFHIYSLNSILLCGLRAGAAILIMQKFDIVSLLQLVEKYRVSIMPIVPPILLAIAKSPDFEKYDVSSVRVLKSGGAPLGKELEDAVREKFPAAVLGQGYGMTEAGPVLTMSLAFAKEPFPVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTVDKEGWLHTGDIGFIDDDDELFIVDRLKELIKFKAFQVAPAELEALLITHPKLSDAAVIGMPDEQAGEVPVAFVVKANGGAMTEEDVKQFISKQVVFYKRLKRVFFVNTIPKAPSGKILRKELRAKLASGAYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3810324 3812399 + Tan0000114.1 Tan06g0498 755202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0498 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Tan06g0498 542 Pfam AMP-binding enzyme 34 400 IPR000873 -
Tan06g0498 542 CDD 4CL 22 532 - -
Tan06g0498 542 Gene3D - 5 436 IPR042099 -
Tan06g0498 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Tan06g0498 542 SUPERFAMILY Acetyl-CoA synthetase-like 17 538 - -
Tan06g0498 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Tan06g0498 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Tan06g0498 542 Gene3D - 437 538 IPR045851 -
Tan06g0498 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0037 Tan-Chr4:356144 Tan06g0498 Tan-Chr6:3810324 2.10E-65 dispersed
Tan06g0498 Tan-Chr6:3810324 Tan08g0791 Tan-Chr8:8784211 3.80E-205 dispersed
Tan06g0497 Tan-Chr6:3798153 Tan06g0498 Tan-Chr6:3810324 3.6e-312 tandem
Tan06g0498 Tan-Chr6:3810324 Tan06g0499 Tan-Chr6:3824167 7.10E-292 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0498 K01904 - csv:101218121 993.416