Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0528 ATGGAGCTTGGCCTGAGCTTAGGCGACGCCCCCAAGCCCTTCCGCTTCATCGAGAAGCAACCGCAACCACCGCCGCCGCAGCGCGGCCTTTCCCGTCCAGATTTAGGGTTCTGCATCGACTTATCGATCGGCCGTCCGGTCGCCGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGGTAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCACAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGACGAAGGTGAAGACCGAACCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTGTACGGCGGCGGAGGGAACATTTCTTCCCGGAGAGATCAAATGGAAAATGGCGTAATAAACGAAGTGGGTGAATCTGAGAGAGCGTCTTCACGAGCGAGCGATGAAGACGAGAATGGCTCCACGAGGAAGAAACTCAGACTCTCGAAAGAGCAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCTAAACAGAAGCAGGCACTGGCTAAGCAACTGAATCTTCGTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACAAAATTGAAGCAAACGGAAGTGGATTGTGAGTATTTGAAACGATGCTGTGAAACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAAACCACAAACTCATTCTACATGCAATTACCGGCCACGACTCTCACCATGTGCCCATCTTGTGAAAGAGTGACCTCAACGTCGGCTTCCACTGCTACCGCCAGCGCCACCGCCGGCGGAGGAAAATCGACGGAGGCAGTTTCAAAACGATCTGGGTTCGCCATTGCAGGGCGAACAAGTTCCTCCTCTTTCCCATTTTCTGCAAAAACGCAGTCCCACCAGTCAACAGCTTCATGA 1002 50.9 MELGLSLGDAPKPFRFIEKQPQPPPPQRGLSRPDLGFCIDLSIGRPVAGEKEDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISSRRDQMENGVINEVGESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSASTATASATAGGGKSTEAVSKRSGFAIAGRTSSSSFPFSAKTQSHQSTAS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4040918 4042662 + Tan0009830.1 Tan06g0528 755232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0528 333 Gene3D - 170 220 - -
Tan06g0528 333 SMART halz 222 265 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0528 333 MobiDBLite consensus disorder prediction 145 169 - -
Tan06g0528 333 MobiDBLite consensus disorder prediction 151 169 - -
Tan06g0528 333 CDD homeodomain 166 223 IPR001356 GO:0003677(InterPro)
Tan06g0528 333 MobiDBLite consensus disorder prediction 309 333 - -
Tan06g0528 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 55 291 IPR050762 -
Tan06g0528 333 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0528 333 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan06g0528 333 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677(InterPro)
Tan06g0528 333 MobiDBLite consensus disorder prediction 284 299 - -
Tan06g0528 333 Pfam Homeodomain 166 220 IPR001356 GO:0003677(InterPro)
Tan06g0528 333 MobiDBLite consensus disorder prediction 46 68 - -
Tan06g0528 333 MobiDBLite consensus disorder prediction 1 113 - -
Tan06g0528 333 SMART HOX_1 164 226 IPR001356 GO:0003677(InterPro)
Tan06g0528 333 SUPERFAMILY Homeodomain-like 158 223 IPR009057 -
Tan06g0528 333 Coils Coil 228 258 - -
Tan06g0528 333 MobiDBLite consensus disorder prediction 284 333 - -
Tan06g0528 333 FunFam Homeobox-leucine zipper protein 18 150 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4653 Tan-Chr1:112426228 Tan06g0528 Tan-Chr6:4040918 2.60E-45 dispersed
Tan03g1718 Tan-Chr3:73128639 Tan06g0528 Tan-Chr6:4040918 4.90E-57 dispersed
Tan06g0528 Tan-Chr6:4040918 Tan11g1807 Tan-Chr11:20164424 1.70E-33 dispersed
Tan08g1519 Tan-Chr8:62923202 Tan06g0528 Tan-Chr6:4040918 5.80E-40 transposed
Tan09g1759 Tan-Chr9:69123874 Tan06g0528 Tan-Chr6:4040918 1.80E-42 transposed
Tan10g0059 Tan-Chr10:933680 Tan06g0528 Tan-Chr6:4040918 2.30E-47 transposed
Tan04g2471 Tan-Chr4:83485416 Tan06g0528 Tan-Chr6:4040918 7.30E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27702 PF00046 Homeodomain 5.60E-16 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0528 K09338 - csv:101221600 567.385