Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0567 ATGACAGACCCTAATTACCCAAATTTCCTCTCTCCCAATTCCTTCACCTTCATCCCTCTTCCACCTTCACCTTCCAATTTCCCCTTCTCCCAATGCCGTCCTCCGTCGCCTCCACCGCCGTCCTCTCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTCTCACCGGAAACCACCGATCACCCCTCCTCCAGCAGCATCGATGACGAAACTACCCTTGCCCTTGACTTCAGCCTCTCTTGCCCTACCTCCGATCTCGACTTCTCCCACTCTTTCTCGCCGGACCCCGCCGGAAAACCCCTCGACGGCGACCTCTCCGGCAACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCGACCCCATCTCAGATCCTCATCGGTCCTACTCAGTTTTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGTTCTCAATACAGAAAAGGACCAGAGTCCTTAAAAGGAACACAGCCAACTGCAATGCTACGGTTGCCATGCTACTGCTGCGCGCCCGGGTGCAAACACAACATCGATAACCCGAGATCGCGACCGCTCAAGGACTTTCGCACCCTCCAGACGCATTACAAGCGAAAGCACGGCATCAAGCCCTTCACTTGCAGAAAATGTAGCAAAGCCTTCGCCGTGAAAGGCGACTGGCGAACGCACGAGAAAAATTGTGGCAAGATTTGGTATTGTTTTTGTGGCTCTGACTTCAAACACAAGCGCTCGCTCAAGGACCACATCAAGGCCTTCGGGCGTGGCCATGGCGCCCTAGGCCTTGACTACTTTGAGGACGACAACGAACCCGCATCCGAAGTCGAACACGAAGGCATCCTCATCCATTGA 882 54.31 MTDPNYPNFLSPNSFTFIPLPPSPSNFPFSQCRPPSPPPPSSPPQALPLLNTLSPETTDHPSSSSIDDETTLALDFSLSCPTSDLDFSHSFSPDPAGKPLDGDLSGNPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFEDDNEPASEVEHEGILIH 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4335233 4337709 - Tan0007040.1 Tan06g0567 755271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0567 293 PANTHER ZINC FINGER PROTEIN WIP2 113 287 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Tan06g0567 293 Gene3D Classic Zinc Finger 194 266 - -
Tan06g0567 293 SUPERFAMILY beta-beta-alpha zinc fingers 199 236 IPR036236 -
Tan06g0567 293 MobiDBLite consensus disorder prediction 47 68 - -
Tan06g0567 293 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Tan06g0567 293 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 215 239 - -
Tan06g0567 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 159 IPR013087 -
Tan06g0567 293 Gene3D Classic Zinc Finger 131 154 - -
Tan06g0567 293 SMART c2h2final6 216 236 IPR013087 -
Tan06g0567 293 SMART c2h2final6 132 154 IPR013087 -
Tan06g0567 293 FunFam Zinc finger protein WIP2 185 267 - -
Tan06g0567 293 MobiDBLite consensus disorder prediction 26 68 - -
Tan06g0567 293 MobiDBLite consensus disorder prediction 26 46 - -
Tan06g0567 293 SUPERFAMILY beta-beta-alpha zinc fingers 124 154 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0567 Tan-Chr6:4335233 Tan08g1211 Tan-Chr8:32551763 2.20E-82 dispersed
Tan06g0567 Tan-Chr6:4335233 Tan07g0737 Tan-Chr7:11750849 5.80E-99 wgd
Tan06g0567 Tan-Chr6:4335233 Tan08g1447 Tan-Chr8:59219365 1.40E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27711 PF00096 zf-C2H2 0.0015 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0567 - - - 0.0