Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0571 ATGGTTGTGGATAATATGAATGAGGATAGACAAATGGAACTACATTACGTCGATACCGGGTTCCCTTACACGGTTACGGAGAGCTTCATGGACTTCTTTGAAGGGCTCCACCAACATCAAGTGCCTGCTTATGCCAATGCTGTGCCATTGCATGATCAGGGAAATGCATACTGGTCAATGAATATGCAATGTTACAAATTTGGAGTATCCGATCATGGGAATACGTATTATGGCCATTCAGAGGAAGGTCACCATTTACCACCTTCAATGGATGTTGGTGAAAGGGAATGGGAGTACCCTTCAACGGTGAATGTCGAAATTCCCGAACCGGCATATGCGCCATCCGTGGAAGAGGATGCTGTAGATGCTCATTCTATACCAGAAGAATGTGATTTAAGCCATCAGGAGGAGACCAGTACTTCTCAAGTTGTATGGCAAGATGAGATAGATCCTGACCACATGACCTATGAGGAACTGTTGGACTTGGGTGAATCAGTTGGAACTGAAAGTCGGGGTCTATCCGAAGAACAAATAAGTTTGCTTCCGACTGCCCGATGCAAGTTAACGAGCTTTTTCTCGAGGAAAAAGCCAGATGAAAGATGTGTGATTTGCCAAATGAGGTACAAGAGAGGGGACAAACAAATTAAATTGCCCTGCAAGCATTTCTACCACAACAAATGCATAACTAAATGGCTCACCATCAACAAAATATGTCCGATCTGCAACATCGAGGTGTTCGGAGACGAAAGCACGAATGCGTCGGGCAGCGATAACCGGCAGTAG 783 44.96 MVVDNMNEDRQMELHYVDTGFPYTVTESFMDFFEGLHQHQVPAYANAVPLHDQGNAYWSMNMQCYKFGVSDHGNTYYGHSEEGHHLPPSMDVGEREWEYPSTVNVEIPEPAYAPSVEEDAVDAHSIPEECDLSHQEETSTSQVVWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPTARCKLTSFFSRKKPDERCVICQMRYKRGDKQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTNASGSDNRQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4388005 4391498 + Tan0019979.1 Tan06g0571 755275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0571 260 SMART ring_2 201 241 IPR001841 -
Tan06g0571 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 246 IPR013083 -
Tan06g0571 260 Pfam Ring finger domain 200 242 IPR001841 -
Tan06g0571 260 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 246 IPR033276 GO:0004842(PANTHER)|GO:0004842(InterPro)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0046621(InterPro)|GO:0048437(PANTHER)
Tan06g0571 260 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Tan06g0571 260 FunFam E3 ubiquitin ligase BIG BROTHER 163 246 - -
Tan06g0571 260 SUPERFAMILY RING/U-box 196 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0571 Tan-Chr6:4388005 Tan09g0859 Tan-Chr9:59799424 1.70E-49 dispersed
Tan04g0420 Tan-Chr4:3505000 Tan06g0571 Tan-Chr6:4388005 2.20E-22 transposed
Tan06g0571 Tan-Chr6:4388005 Tan07g0741 Tan-Chr7:11806206 2.00E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0571 K19045 - csv:101210160 508.064