Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g0571 | ATGGTTGTGGATAATATGAATGAGGATAGACAAATGGAACTACATTACGTCGATACCGGGTTCCCTTACACGGTTACGGAGAGCTTCATGGACTTCTTTGAAGGGCTCCACCAACATCAAGTGCCTGCTTATGCCAATGCTGTGCCATTGCATGATCAGGGAAATGCATACTGGTCAATGAATATGCAATGTTACAAATTTGGAGTATCCGATCATGGGAATACGTATTATGGCCATTCAGAGGAAGGTCACCATTTACCACCTTCAATGGATGTTGGTGAAAGGGAATGGGAGTACCCTTCAACGGTGAATGTCGAAATTCCCGAACCGGCATATGCGCCATCCGTGGAAGAGGATGCTGTAGATGCTCATTCTATACCAGAAGAATGTGATTTAAGCCATCAGGAGGAGACCAGTACTTCTCAAGTTGTATGGCAAGATGAGATAGATCCTGACCACATGACCTATGAGGAACTGTTGGACTTGGGTGAATCAGTTGGAACTGAAAGTCGGGGTCTATCCGAAGAACAAATAAGTTTGCTTCCGACTGCCCGATGCAAGTTAACGAGCTTTTTCTCGAGGAAAAAGCCAGATGAAAGATGTGTGATTTGCCAAATGAGGTACAAGAGAGGGGACAAACAAATTAAATTGCCCTGCAAGCATTTCTACCACAACAAATGCATAACTAAATGGCTCACCATCAACAAAATATGTCCGATCTGCAACATCGAGGTGTTCGGAGACGAAAGCACGAATGCGTCGGGCAGCGATAACCGGCAGTAG | 783 | 44.96 | MVVDNMNEDRQMELHYVDTGFPYTVTESFMDFFEGLHQHQVPAYANAVPLHDQGNAYWSMNMQCYKFGVSDHGNTYYGHSEEGHHLPPSMDVGEREWEYPSTVNVEIPEPAYAPSVEEDAVDAHSIPEECDLSHQEETSTSQVVWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPTARCKLTSFFSRKKPDERCVICQMRYKRGDKQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTNASGSDNRQ | 260 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4388005 | 4391498 | + | Tan0019979.1 | Tan06g0571 | 755275 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g0571 | 260 | SMART | ring_2 | 201 | 241 | IPR001841 | - | |
Tan06g0571 | 260 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 246 | IPR013083 | - | |
Tan06g0571 | 260 | Pfam | Ring finger domain | 200 | 242 | IPR001841 | - | |
Tan06g0571 | 260 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 6 | 246 | IPR033276 | GO:0004842(PANTHER)|GO:0004842(InterPro)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0046621(InterPro)|GO:0048437(PANTHER) | |
Tan06g0571 | 260 | ProSiteProfiles | Zinc finger RING-type profile. | 201 | 242 | IPR001841 | - | |
Tan06g0571 | 260 | FunFam | E3 ubiquitin ligase BIG BROTHER | 163 | 246 | - | - | |
Tan06g0571 | 260 | SUPERFAMILY | RING/U-box | 196 | 247 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g0571 | Tan-Chr6:4388005 | Tan09g0859 | Tan-Chr9:59799424 | 1.70E-49 | dispersed | |
Tan04g0420 | Tan-Chr4:3505000 | Tan06g0571 | Tan-Chr6:4388005 | 2.20E-22 | transposed | |
Tan06g0571 | Tan-Chr6:4388005 | Tan07g0741 | Tan-Chr7:11806206 | 2.00E-42 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g0571 | K19045 | - | csv:101210160 | 508.064 |