Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0578 ATGGAAACAGGAGAGTCTGTGGCAAAGGTTATAAAGAACATGGGCTCCCACACCTGTCAAATATGTGGAGATAATGTCGGGAAGACCGTTGAGGGTGAAACGTTTGTTGCCTGTGATGTTTGCACCTTTCCTGTTTGCAGACCATGCTATGAGTACGAGAGAAAAGATGGGAATCAGTCTTGCCCTCAATGCAAAAGCAGATACAAGAGGCACAAAGGAAGTCCCGCTGTTCTTGGTGATGAAGTGGATGTTGAGCTTGATGAAGATGATGATGCCATTGATTTAAATTACATTTCTGAAAGTCAAAAACAGAAGCAGAAGATTGCAGAGCGCATGATGAGCTGGCAGATGGCATATGGACAAGCACAAGATCTCCCGCCTCCAATTTACGACAAAGAAGTTTCTTTAAATCACATTCCCTTGCTCACCAATGGGCAGGAGGTTTCTGGAGAACTTTCAGCTGCATCCCCCGAGCATCATTCGATGGCATCACCAGGACATCCTCGTGGGAAGCCAGTATATTCTCTTCCTTATTCGGGTGATATTAACCAATCACTTAATGTGCGAGGTGTGGACCCTACGAAAGAGTATAATTCATCAGGGCTAGGCAATGTAGCTTGGAAAGAGAGAGTTGACGGGTGGAAGATGAAACAGGAGAAGAATGCTGTACCAATGAGCACAGCCCATGCTGCATCTGAAAGGGGAGGTGGAGATATTGATGCCTGCACAGATGTACTTGTTGATGACTCCTTATTAAACGATGAAGCTCGCCAGCCTCTCTCGAGAAAGGTTTCTATTCCATCATCAAGGATAAACCCTTACCGAATGGTGATTGTTCTGCGACTTGTGATTCTTTGTTTTTTCTTGCACTATCGAATCACGAATCCAGTACGCAATGCATACGCTCTATGGCTGATATCTGTTATATGTGAGATTTGGTTTGCAATATCCTGGATATTAGATCAGTTCCCGAAGTGGCTTCCTGTTAACCGTGAGACCTATCTTGATCGGCTTGCGTTAAGATATGACAGGGAGGGAGAACCATCACAGCTTGCTGCTGTCGACATTTTTGTGAGTACGGTTGACCCACTGAAGGAGCCTCCACTTGTCACAGCCAACACCGTGCTATCTATTCTCGCTGTTGACTACCCAATTGACAAGGTCTCATGCTATGTCTCTGATGATGGAGCTGCCATGTTGACATTCGAAGCATTATCCGAGACATCAGAGTTTGCAAGGTCATGGGTGCCTTTCTGCAAGAAATACAGCATCGAGCCTCGGGCTCCAGAATGGTACTTTGCTCAGAAAATTGATTACTTGAAGGATAAAGTCCACCCATCATTTGTCAAAGATCGAAGAGCGATGAAGAGAGAATACGAGGAATTTAAGGTTCGCATCAACGGTCTGGTATCAAAGGCACAGAAGGTTCCTGAAGAAGGATGGATCATGCAAGATGGAACTCCGTGGCCTGGAAATAATACTAGAGACCATCCAGGAATGATCCAGGTTTTCTTAGGCCAAAACGGTGGACTGGATTCCGAAGGTAACGAGTTGCCTCGTTTAGTCTATGTATCTCGTGAAAAACGTCCAGGATTCCAACATCATAAGAAAGCTGGTGCAATGAATGCTCTTGTTCGCGTGTCTGCTGTCCTTACGAATGGCCCATTCTTGTTGAATCTTGACTGTGATCACTACATAAACAATAGCAAGGCATTGAGGGAAGCAATGTGTTTCATGATGGATCCTAACCTTGGCAAATACGTATGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATAAGAATGATCGATATGCCAACCGGAATACTGTTTTCTTTGATATAAATTTAAGAGGTTTAGATGGCATTCAAGGTCCAGTTTATGTGGGTACTGGATGTGTCTTCAATAGAACTGCACTGTATGGTTATGAACCTCCTCATAAGCCGAAGCATCGGAAACCGGGATTTCTATCTTCACTATGTGGCGGATCTCGAAAGAAGAATTCAAAATCAAGTAAAAAAAGCCCAGACAAGAAGAAATCAAGCAAGCATGTGGACCCCACAGTGCCGATTTTCAATCTCGACGACATTGAAGAAGTGGTTGAAGGTGCTGGATATGATGATGAGAAGGCACTCCTAATGTCACAAATGACCCTCGAGCAAAGGTTTGGTCAGTCTGCTGTTTTTGTTGCCTCAACCCTCATGGAAAACGGTGGCGTTCCTCAATCCGCGACACCAGAGTCTCTTCTGAAGGAGGCTATTCATGTTATCAGTTGCGGATATGAAGACAGAACCGACTGGGGATCTGAGATTGGATGGATTTATGGCTCTGTCACTGAAGATATCCTTACAGGATTCAAAATGCATGCCCGTGGTTGGCGGTCGATTTATTGCATGCCTAAGCGTCCTGCCTTCAAAGGGTCTGCGCCTATCAATCTTTCAGATCGATTAAACCAAGTGCTTCGATGGGCCCTCGGTTCTGTGGAGATTCTTCTGAGTAGGCATTGTCCCATCTGGTATGGCTATGGCGGAAGGCTCAAATGGCTCGAACGGTTTGCTTATGTGAACACTACGATCTATCCGATCACCGCTGTTCCTCTTCTCATGTATTGTACCTTACCAGCTGTGTGTCTGCTGACAAACAAATTCATTATTCCCCAGATTAGCAACATTGCAAGTATATGGTTTATATCCCTCTTTCTTTCCATCTTCGCAACTGGAATTCTTGAGATGAGATGGAGCGGGGTTGGAATCGATGAATGGTGGAGAAACGAACAATTTTGGGTCATTGGTGGCGTTTCAGCTCACCTGTTTGCTGTTTTCCAAGGTCTGCTCAAGGTTCTCGCGGGAATCGACACCAATTTCACGGTCACGTCCAAGGCATCTGATGAAGACGGGGACTTCGCCGAGCTTTACTTGTTCAAATGGACAACTCTTCTCATACCACCAACGACTCTCCTTATAGTAAACCTGGTCGGGGTCGTAGCAGGGATATCTTATGCAATCAACAGCGGATACCAATCATGGGGACCGCTATTTGGCAAGCTATTCTTCGCCTTTTGGGTGATCATTCATCTCTATCCATTCTTGAAAGGTTTGATGGGTCGTCAAAACAGAACACCCACCATTGTTGTCGTATGGTCGATTCTGCTTGCTTCCATCTTCTCGTTGTTATGGGTGAGGATCGATCCGTTCACTACAACAGTCACAGGTCCCGACGTCGAGGAGTGTGGAATCAACTGCTAG 3249 45.24 METGESVAKVIKNMGSHTCQICGDNVGKTVEGETFVACDVCTFPVCRPCYEYERKDGNQSCPQCKSRYKRHKGSPAVLGDEVDVELDEDDDAIDLNYISESQKQKQKIAERMMSWQMAYGQAQDLPPPIYDKEVSLNHIPLLTNGQEVSGELSAASPEHHSMASPGHPRGKPVYSLPYSGDINQSLNVRGVDPTKEYNSSGLGNVAWKERVDGWKMKQEKNAVPMSTAHAASERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCFFLHYRITNPVRNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPIDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVSKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPHKPKHRKPGFLSSLCGGSRKKNSKSSKKSPDKKKSSKHVDPTVPIFNLDDIEEVVEGAGYDDEKALLMSQMTLEQRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDRTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAVPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTTVTGPDVEECGINC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4432734 4439605 - Tan0017677.1 Tan06g0578 755282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0578 1082 CDD mRING-HC-C4C4_CesA 17 67 - -
Tan06g0578 1082 FunFam Cellulose synthase 471 645 - -
Tan06g0578 1082 Pfam Cellulose synthase 354 1075 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Tan06g0578 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 261 1051 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Tan06g0578 1082 SUPERFAMILY RING/U-box 6 89 - -
Tan06g0578 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 368 894 IPR029044 -
Tan06g0578 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 492 645 IPR029044 -
Tan06g0578 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Tan06g0578 1082 MobiDBLite consensus disorder prediction 647 688 - -
Tan06g0578 1082 Pfam Zinc-binding RING-finger 10 83 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3661 Tan-Chr1:101479751 Tan06g0578 Tan-Chr6:4432734 0.00E+00 dispersed
Tan03g0359 Tan-Chr3:51856717 Tan06g0578 Tan-Chr6:4432734 0.00E+00 dispersed
Tan06g0578 Tan-Chr6:4432734 Tan09g1580 Tan-Chr9:67607605 0.00E+00 dispersed
Tan06g0578 Tan-Chr6:4432734 Tan05g0894 Tan-Chr5:7188981 4.00E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0578 K10999 - csv:101206590 2093.93