Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0626 ATGGCGGAATCCGAGCGTCGCGCGAAACGCCCTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTCAACCACTTGAAATGTAAACCAGGATCACGTCTGAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCACTGTTGGAGCATATGTGAAGCGTGGGGAGGAGTCTGGTCATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAAGATTATGATTACACGTAAAATGGACACACATAACAAATCTGAGTGGTTGTTCAATGGAAAAATTGTGCCAAAGAAAGATGTAGCCGCAATCATTCAAAGGTTTAACATCCAAGTTAATAATTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCAATCCTACATCATGCACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAGCGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTGAAGGCATTAAATGCCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTGAAAAAGGTTGAGTCCATGAGAAAGAAACTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCCAAAAAGAAGTTGGATGAAGCTGCTAACACTTTGAATGAATTAAAGGAGCCAATTGAGAAGCAAAAAAAGGAGAAGGCAATGTTGGATGCTAAAACTAAAAAGTATAGCACTCTCATTAATGACAATCACAGGAAAAGGATGGAACTTCAGGAAACTGAAAACCGTTTGGGGGTACAAGTGCAAGGAAAATTTAAAGAAATGGAAGACTTAAGGAAACAAGAAGAATCTTGTCAACAGAGAATCTTACAAGCTAAAGAAGAACTCGAAGCTGCTGAATTGGAACTTCAGAATTTGCCTCCTTACGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGCTGGAAGTTTCTGCAAGTCAGAAGAGACTAATGAAGTCAGATATTGAAAAAAATATATCCCAAAAAAGAAATACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGGAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGACCAGTGTTACTAGAGGTTAATGTATCAAATCGGACTCACGCTGACTACTTAGAAGGTCATATCCCATCCTACGTATGGAAGTCCTTCATAACACAAGATTCTGATGATCGTGACATTATGGTAAAAAACTTGGGTTCATTTGGTGTTCCCATCTTAAACTATGTGGGAGGCGAAAGGCGCACAAATCAACATTTTGAGGTTTCTGAGGAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAATTTTTGATGCTCCTCCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAGAAGGCAGATGAGGTCTCAAAATTGGGAATTTTGGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATATGGTGGTCATATGTCTGGAAGTGTGGAGCCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGCCTTCGTTCCAGGAAAAATGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGATAACTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGATGACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGCCGGGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGAGGGAAGATGACCTGGATACTGTTGTGGCTAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAAAGGTTCCATTGTGCAATTGAAATTAAGAATTTGCTTGTTGAGGCCGTTTCTTATAGACAGAGCTTGACTAAGAACCATATGTCCGCGATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAGAAGTTTGCTCTGCAAGCATCAGTGCAGTTCGAGTACTGCAAGAAAGAAGTTGAGGACTATCGACAGCAACTTTCAGTTGCCAAGAAGCATGCAGAATCTATTGCTGTGATCACACGTGATCTCGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAACTGGAGGCCGCTATTCAAGATAATATTTCGCAAGCTAATTCCATTCTATTCTTAAACCATAATGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAATACCATTGCACGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAGACTTGTTTCTCAGATAAATGAGACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAACATGATATGGACTTCGATCAATTTGGGATACTTATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCCGGAGGGGAACGCTCGGTATCGACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACGAATACGCCGCAGTGTTTCCTACTTACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAAGCCTGTAGCATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCTAGAGCATGGAGCAACGGAGATAGCTGGGGAACGTTGATGAACTACGTAGGAGAAAGCCGATGTTGA 3162 40.96 MAESERRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATTVGAYVKRGEESGHVRITLRGNTKEEKIMITRKMDTHNKSEWLFNGKIVPKKDVAAIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHHALVEKSHDIKNIERAVEKNGDTLDQLKALNAEQEKDVERVRQRDELLKKVESMRKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNELKEPIEKQKKEKAMLDAKTKKYSTLINDNHRKRMELQETENRLGVQVQGKFKEMEDLRKQEESCQQRILQAKEELEAAELELQNLPPYEHPKDEIERLRAQILELEVSASQKRLMKSDIEKNISQKRNTLRQCLDRLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFEVSEEVRAFGIYSRLDQIFDAPPAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESVSALEDNCKSCQNELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCAIEIKNLLVEAVSYRQSLTKNHMSAIEIEAKIRELEVNLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKHAESIAVITRDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINTIARKLEADKHELRKCMAEVDELKGNWLPTLRRLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4768270 4789231 + Tan0010442.1 Tan06g0626 755330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0626 1053 Gene3D - 847 1022 IPR027417 -
Tan06g0626 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 1004 IPR027417 -
Tan06g0626 1053 Coils Coil 248 289 - -
Tan06g0626 1053 FunFam Structural maintenance of chromosomes 5 849 1020 - -
Tan06g0626 1053 Coils Coil 332 359 - -
Tan06g0626 1053 Pfam RecF/RecN/SMC N terminal domain 25 992 IPR003395 -
Tan06g0626 1053 Coils Coil 747 767 - -
Tan06g0626 1053 Coils Coil 842 879 - -
Tan06g0626 1053 Coils Coil 622 698 - -
Tan06g0626 1053 Coils Coil 195 229 - -
Tan06g0626 1053 Gene3D - 24 218 IPR027417 -
Tan06g0626 1053 Coils Coil 401 428 - -
Tan06g0626 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 996 IPR027417 -
Tan06g0626 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1045 IPR027131 GO:0000724(PANTHER)|GO:0000724(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(PANTHER)|GO:0030915(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0626 K22803 - - csv:101210248 1955.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0414 Tan-Chr1:3762985 Tan06g0626 Tan-Chr6:4768270 4.00E-17 dispersed
Tan06g0626 Tan-Chr6:4768270 Tan06g0629 Tan-Chr6:4768270 0.00E+00 dispersed
Tan06g0626 Tan-Chr6:4768270 Tan06g0627 Tan-Chr6:4768270 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g0626 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 70.1 0.0e+00 1395.6
Tan06g0629 . 4 975 Structural Maintenance of Chromosomes family AT5G15920 68.8 0.0e+00 1268.1
Tan06g0627 . 4 973 Structural Maintenance of Chromosomes family AT5G15920 68.8 0.0e+00 1264.2
Tan06g0628 . 4 929 Structural Maintenance of Chromosomes family AT5G15920 67.6 0.0e+00 1181.4
Tan01g0414 . 13 1052 Structural Maintenance of Chromosomes family AT5G07660 63.6 0.0e+00 1260.0
Tan01g0414 . 10 1052 Structural Maintenance of Chromosomes family AT5G61460 66.2 0.0e+00 1323.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32