Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0627 ATGGATCTGCTCCTTGGAAGGGCGACCACTGTTGGAGCATATGTGAAGCGTGGGGAGGAGTCTGGTCATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAAGATTATGATTACACGTAAAATGGACACACATAACAAATCTGAGTGGTTGTTCAATGGAAAAATTGTGCCAAAGAAAGATGTAGCCGCAATCATTCAAAGGTTTAACATCCAAGTTAATAATTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCAATCCTACATCATGCACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAGCGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTGAAGGCATTAAATGCCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTGAAAAAGGTTGAGTCCATGAGAAAGAAACTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCCAAAAAGAAGTTGGATGAAGCTGCTAACACTTTGAATGAATTAAAGGAGCCAATTGAGAAGCAAAAAAAGGAGAAGGCAATGTTGGATGCTAAAACTAAAAAGTATAGCACTCTCATTAATGACAATCACAGGAAAAGGATGGAACTTCAGGAAACTGAAAACCGTTTGGGGGTACAAGTGCAAGGAAAATTTAAAGAAATGGAAGACTTAAGGAAACAAGAAGAATCTTGTCAACAGAGAATCTTACAAGCTAAAGAAGAACTCGAAGCTGCTGAATTGGAACTTCAGAATTTGCCTCCTTACGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGCTGGAAGTTTCTGCAAGTCAGAAGAGACTAATGAAGTCAGATATTGAAAAAAATATATCCCAAAAAAGAAATACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGGAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGACCAGTGTTACTAGAGGTTAATGTATCAAATCGGACTCACGCTGACTACTTAGAAGGTCATATCCCATCCTACGTATGGAAGTCCTTCATAACACAAGATTCTGATGATCGTGACATTATGGTAAAAAACTTGGGTTCATTTGGTGTTCCCATCTTAAACTATGTGGGAGGCGAAAGGCGCACAAATCAACATTTTGAGGTTTCTGAGGAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAATTTTTGATGCTCCTCCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAGAAGGCAGATGAGGTCTCAAAATTGGGAATTTTGGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATATGGTGGTCATATGTCTGGAAGTGTGGAGCCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGCCTTCGTTCCAGGAAAAATGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGATAACTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGATGACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGCCGGGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGAGGGAAGATGACCTGGATACTGTTGTGGCTAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAAAGGTTCCATTGTGCAATTGAAATTAAGAATTTGCTTGTTGAGGCCGTTTCTTATAGACAGAGCTTGACTAAGAACCATATGTCCGCGATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAGAAGTTTGCTCTGCAAGCATCAGTGCAGTTCGAGTACTGCAAGAAAGAAGTTGAGGACTATCGACAGCAACTTTCAGTTGCCAAGAAGCATGCAGAATCTATTGCTGTGATCACACGTGATCTCGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAACTGGAGGCCGCTATTCAAGATAATATTTCGCAAGCTAATTCCATTCTATTCTTAAACCATAATGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAATACCATTGCACGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAGACTTGTTTCTCAGATAAATGAGACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAACATGATATGGACTTCGATCAATTTGGGATACTTATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCCGGAGGGGAACGCTCGGTATCGACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACGAATACGCCGCAGTGTTTCCTACTTACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAAGCCTGTAGCATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCTAGAGCATGGAGCAACGGAGATAGCTGGGGAACGTTGATGAACTACGTAGGAGAAAGCCGATGTTGA 2949 40.56 MDLLLGRATTVGAYVKRGEESGHVRITLRGNTKEEKIMITRKMDTHNKSEWLFNGKIVPKKDVAAIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHHALVEKSHDIKNIERAVEKNGDTLDQLKALNAEQEKDVERVRQRDELLKKVESMRKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNELKEPIEKQKKEKAMLDAKTKKYSTLINDNHRKRMELQETENRLGVQVQGKFKEMEDLRKQEESCQQRILQAKEELEAAELELQNLPPYEHPKDEIERLRAQILELEVSASQKRLMKSDIEKNISQKRNTLRQCLDRLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFEVSEEVRAFGIYSRLDQIFDAPPAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESVSALEDNCKSCQNELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCAIEIKNLLVEAVSYRQSLTKNHMSAIEIEAKIRELEVNLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKHAESIAVITRDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINTIARKLEADKHELRKCMAEVDELKGNWLPTLRRLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4768270 4789231 + Tan0010442.2 Tan06g0627 755331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0627 982 Pfam RecF/RecN/SMC N terminal domain 21 922 IPR003395 -
Tan06g0627 982 Gene3D - 4 147 IPR027417 -
Tan06g0627 982 Coils Coil 177 218 - -
Tan06g0627 982 Coils Coil 124 158 - -
Tan06g0627 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 933 IPR027417 -
Tan06g0627 982 Coils Coil 551 627 - -
Tan06g0627 982 Coils Coil 261 288 - -
Tan06g0627 982 FunFam Structural maintenance of chromosomes 5 778 949 - -
Tan06g0627 982 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 4 974 IPR027131 GO:0000724(PANTHER)|GO:0000724(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(PANTHER)|GO:0030915(InterPro)
Tan06g0627 982 Coils Coil 771 808 - -
Tan06g0627 982 Coils Coil 676 696 - -
Tan06g0627 982 Coils Coil 330 357 - -
Tan06g0627 982 Gene3D - 776 948 IPR027417 -
Tan06g0627 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 284 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0627 Tan-Chr6:4768270 Tan06g0629 Tan-Chr6:4768270 0.00E+00 dispersed
Tan06g0626 Tan-Chr6:4768270 Tan06g0627 Tan-Chr6:4768270 0.00E+00 tandem
Tan06g0627 Tan-Chr6:4768270 Tan06g0628 Tan-Chr6:4768270 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0627 K22803 - csv:101210248 1811.96