Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0627 ATGGATCTGCTCCTTGGAAGGGCGACCACTGTTGGAGCATATGTGAAGCGTGGGGAGGAGTCTGGTCATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAAGATTATGATTACACGTAAAATGGACACACATAACAAATCTGAGTGGTTGTTCAATGGAAAAATTGTGCCAAAGAAAGATGTAGCCGCAATCATTCAAAGGTTTAACATCCAAGTTAATAATTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCAATCCTACATCATGCACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAGCGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTGAAGGCATTAAATGCCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTGAAAAAGGTTGAGTCCATGAGAAAGAAACTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCCAAAAAGAAGTTGGATGAAGCTGCTAACACTTTGAATGAATTAAAGGAGCCAATTGAGAAGCAAAAAAAGGAGAAGGCAATGTTGGATGCTAAAACTAAAAAGTATAGCACTCTCATTAATGACAATCACAGGAAAAGGATGGAACTTCAGGAAACTGAAAACCGTTTGGGGGTACAAGTGCAAGGAAAATTTAAAGAAATGGAAGACTTAAGGAAACAAGAAGAATCTTGTCAACAGAGAATCTTACAAGCTAAAGAAGAACTCGAAGCTGCTGAATTGGAACTTCAGAATTTGCCTCCTTACGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGCTGGAAGTTTCTGCAAGTCAGAAGAGACTAATGAAGTCAGATATTGAAAAAAATATATCCCAAAAAAGAAATACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGGAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGACCAGTGTTACTAGAGGTTAATGTATCAAATCGGACTCACGCTGACTACTTAGAAGGTCATATCCCATCCTACGTATGGAAGTCCTTCATAACACAAGATTCTGATGATCGTGACATTATGGTAAAAAACTTGGGTTCATTTGGTGTTCCCATCTTAAACTATGTGGGAGGCGAAAGGCGCACAAATCAACATTTTGAGGTTTCTGAGGAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAATTTTTGATGCTCCTCCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAGAAGGCAGATGAGGTCTCAAAATTGGGAATTTTGGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATATGGTGGTCATATGTCTGGAAGTGTGGAGCCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGCCTTCGTTCCAGGAAAAATGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGATAACTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGATGACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGCCGGGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGAGGGAAGATGACCTGGATACTGTTGTGGCTAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAAAGGTTCCATTGTGCAATTGAAATTAAGAATTTGCTTGTTGAGGCCGTTTCTTATAGACAGAGCTTGACTAAGAACCATATGTCCGCGATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAGAAGTTTGCTCTGCAAGCATCAGTGCAGTTCGAGTACTGCAAGAAAGAAGTTGAGGACTATCGACAGCAACTTTCAGTTGCCAAGAAGCATGCAGAATCTATTGCTGTGATCACACGTGATCTCGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAACTGGAGGCCGCTATTCAAGATAATATTTCGCAAGCTAATTCCATTCTATTCTTAAACCATAATGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAATACCATTGCACGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAGACTTGTTTCTCAGATAAATGAGACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAACATGATATGGACTTCGATCAATTTGGGATACTTATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCCGGAGGGGAACGCTCGGTATCGACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACGAATACGCCGCAGTGTTTCCTACTTACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAAGCCTGTAGCATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCTAGAGCATGGAGCAACGGAGATAGCTGGGGAACGTTGATGAACTACGTAGGAGAAAGCCGATGTTGA 2949 40.56 MDLLLGRATTVGAYVKRGEESGHVRITLRGNTKEEKIMITRKMDTHNKSEWLFNGKIVPKKDVAAIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHHALVEKSHDIKNIERAVEKNGDTLDQLKALNAEQEKDVERVRQRDELLKKVESMRKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNELKEPIEKQKKEKAMLDAKTKKYSTLINDNHRKRMELQETENRLGVQVQGKFKEMEDLRKQEESCQQRILQAKEELEAAELELQNLPPYEHPKDEIERLRAQILELEVSASQKRLMKSDIEKNISQKRNTLRQCLDRLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFEVSEEVRAFGIYSRLDQIFDAPPAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESVSALEDNCKSCQNELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCAIEIKNLLVEAVSYRQSLTKNHMSAIEIEAKIRELEVNLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKHAESIAVITRDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINTIARKLEADKHELRKCMAEVDELKGNWLPTLRRLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4768270 4789231 + Tan0010442.2 Tan06g0627 755331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0627 982 Pfam RecF/RecN/SMC N terminal domain 21 922 IPR003395 -
Tan06g0627 982 Gene3D - 4 147 IPR027417 -
Tan06g0627 982 Coils Coil 177 218 - -
Tan06g0627 982 Coils Coil 124 158 - -
Tan06g0627 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 933 IPR027417 -
Tan06g0627 982 Coils Coil 551 627 - -
Tan06g0627 982 Coils Coil 261 288 - -
Tan06g0627 982 FunFam Structural maintenance of chromosomes 5 778 949 - -
Tan06g0627 982 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 4 974 IPR027131 GO:0000724(PANTHER)|GO:0000724(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(PANTHER)|GO:0030915(InterPro)
Tan06g0627 982 Coils Coil 771 808 - -
Tan06g0627 982 Coils Coil 676 696 - -
Tan06g0627 982 Coils Coil 330 357 - -
Tan06g0627 982 Gene3D - 776 948 IPR027417 -
Tan06g0627 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 284 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0627 K22803 - - csv:101210248 1811.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0627 Tan-Chr6:4768270 Tan06g0629 Tan-Chr6:4768270 0.00E+00 dispersed
Tan06g0626 Tan-Chr6:4768270 Tan06g0627 Tan-Chr6:4768270 0.00E+00 tandem
Tan06g0627 Tan-Chr6:4768270 Tan06g0628 Tan-Chr6:4768270 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g0626 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 70.1 0.0e+00 1395.6
Tan06g0629 . 4 975 Structural Maintenance of Chromosomes family AT5G15920 68.8 0.0e+00 1268.1
Tan06g0627 . 4 973 Structural Maintenance of Chromosomes family AT5G15920 68.8 0.0e+00 1264.2
Tan06g0628 . 4 929 Structural Maintenance of Chromosomes family AT5G15920 67.6 0.0e+00 1181.4
Tan01g0414 . 13 1052 Structural Maintenance of Chromosomes family AT5G07660 63.6 0.0e+00 1260.0
Tan01g0414 . 10 1052 Structural Maintenance of Chromosomes family AT5G61460 66.2 0.0e+00 1323.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32