Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0761 ATGGCGACGAGGAATCGGACCGCGCAGTTCAGAAGGCACAGGGATGCCGTGAAGAGCGTCCGTGCGCCTTTATCTTCCTCGGCAGCTGGTTCGAGCGGGCCAGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGTTCTTCTTCTTACGCTCCTCTGAGCACTGAAGATCCAGGACCGTCGAGCGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATACTGAAGAAATAACGGTTAACATACAGCAAATTCGTAGGAAGATGGCGGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATCAGCATACGATTGAGACACTAACGCGAGAGATTACCAATCTTTTGAAAACCTCTGAGAAGAGGTTGAAGAAAATTTCTAGTACTGGGTCATCGGAGGATATTAATATTAGAAAAAATGTTCAGCGTTCTCTTGCTACAGAGCTTCAAAATCTTTCTATGGACCTTCGTAGAAGACAGTCAATGTATCTGAAACGACTGCAGCAGCAAAAGGAGGGACATGATGAAATTGATTTGGAGATAAATTTGAATGGCAACAAAACTCTACATGAGGATGATGAATATGGTGAATTTGGAATCAATGAAAACCAAACGATGGCATTAGGAATCGATGAGCAACATATCCAGGGAAGGGAGAAGGAGATCAGACAGGTTGTGAAATCAGTGAATGGACTCGCACAAATTATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACTATTGTCGATAGGATCGACCACAATATTCAAAATGTTGCTGCATCCGTGGAGGAAGGTTATAAACAACTTCAGAAGGCAGAGAAGACTCAGAAGAATGGAGGAATGGTGAAGTGTGCAACAGTGCTTGTTATTATGTGTTTCGTAATGCTGGTTCTGTTGATACTCAAGGAGATTATTATGTAA 966 43.06 MATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSDAFMVGLPPAWVDDTEEITVNIQQIRRKMAELVKAHSKALMPSFADGKEDQHTIETLTREITNLLKTSEKRLKKISSTGSSEDINIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDEIDLEINLNGNKTLHEDDEYGEFGINENQTMALGIDEQHIQGREKEIRQVVKSVNGLAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGYKQLQKAEKTQKNGGMVKCATVLVIMCFVMLVLLILKEIIM 321
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 6026018 6031004 - Tan0008342.1 Tan06g0761 755465
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0761 321 FunFam Syntaxin-43 72 279 - -
Tan06g0761 321 PANTHER SYNTAXIN 82 306 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan06g0761 321 SMART tSNARE_6 219 287 IPR000727 -
Tan06g0761 321 SMART SynN_4 66 181 IPR006011 GO:0016020(InterPro)
Tan06g0761 321 Pfam SNARE domain 261 313 IPR000727 -
Tan06g0761 321 MobiDBLite consensus disorder prediction 1 32 - -
Tan06g0761 321 CDD SNARE_syntaxin16 228 286 - -
Tan06g0761 321 Gene3D - 72 279 - -
Tan06g0761 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Tan06g0761 321 SUPERFAMILY t-snare proteins 71 280 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0761 Tan-Chr6:6026018 Tan08g0630 Tan-Chr8:6385332 4.90E-75 dispersed
Tan06g0761 Tan-Chr6:6026018 Tan06g0762 Tan-Chr6:6026018 1.20E-166 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0761 K08489 - csv:101204192 548.895