Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0762 ATGGCGACGAGGAATCGGACCGCGCAGTTCAGAAGGCACAGGGATGCCGTGAAGAGCGTCCGTGCGCCTTTATCTTCCTCGGCAGCTGGTTCGAGCGGGCCAGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGTTCTTCTTCTTACGCTCCTCTGAGCACTGAAGATCCAGGACCGTCGAGCGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATACTGAAGAAATAACGGTTAACATACAGCAAATTCGTAGGAAGATGGCGGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATCAGCATACGATTGAGACACTAACGCGAGAGATTACCAATCTTTTGAAAACCTCTGAGAAGAGGTTGAAGAAAATTTCTAGTACTGGGTCATCGGAGGATATTAATATTAGAAAAAATGTTCAGCGTTCTCTTGCTACAGAGCTTCAAAATCTTTCTATGGACCTTCGTAGAAGACAGTCAATGTATCTGAAACGACTGCAGCAGCAAAAGGAGCGAGGCTTAGTTACTTTTGTATTGCAGGGACATGATGAAATTGATTTGGAGATAAATTTGAATGGCAACAAAACTCTACATGAGGATGATGAATATGGTGAATTTGGAATCAATGAAAACCAAACGATGGCATTAGGAATCGATGAGCAACATATCCAGGGAAGGGAGAAGGAGATCAGACAGGTTGTGAAATCAGTGAATGGACTCGCACAAATTATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACTATTGTCGATAGGATCGACCACAATATTCAAAATGTTGCTGCATCCGTGGAGGAAGGTTATAAACAACTTCAGAAGGCAGAGAAGACTCAGAAGAATGGAGGAATGGTGAAGTGTGCAACAGTGCTTGTTATTATGTGTTTCGTAATGCTGGTTCTGTTGATACTCAAGGAGATTATTATGTAA 993 43.0 MATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSDAFMVGLPPAWVDDTEEITVNIQQIRRKMAELVKAHSKALMPSFADGKEDQHTIETLTREITNLLKTSEKRLKKISSTGSSEDINIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKERGLVTFVLQGHDEIDLEINLNGNKTLHEDDEYGEFGINENQTMALGIDEQHIQGREKEIRQVVKSVNGLAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGYKQLQKAEKTQKNGGMVKCATVLVIMCFVMLVLLILKEIIM 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6026018 6031004 - Tan0008342.2 Tan06g0762 755466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0762 330 CDD SNARE_syntaxin16 237 295 - -
Tan06g0762 330 SMART SynN_4 66 181 IPR006011 GO:0016020(InterPro)
Tan06g0762 330 PANTHER SYNTAXIN 82 315 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan06g0762 330 MobiDBLite consensus disorder prediction 1 32 - -
Tan06g0762 330 FunFam Syntaxin-43 72 288 - -
Tan06g0762 330 SUPERFAMILY t-snare proteins 71 289 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan06g0762 330 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 234 296 IPR000727 -
Tan06g0762 330 Gene3D - 72 288 - -
Tan06g0762 330 SMART tSNARE_6 228 296 IPR000727 -
Tan06g0762 330 Pfam SNARE domain 270 322 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0762 Tan-Chr6:6026018 Tan08g0630 Tan-Chr8:6385332 2.50E-74 dispersed
Tan06g0761 Tan-Chr6:6026018 Tan06g0762 Tan-Chr6:6026018 1.20E-166 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0762 K08489 - csv:101204192 541.191