Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0778 ATGGCGCCCACCTCATTCTACTCCCTCATCCTCCTCCTCTCCCTCTACATCACCACCGCCGCCCCTCCGCCGCCTCCCACCGGATCGGTCTGCAGCTCCACCCCAGACCCCTCCTACTGCAAATCCGCCCTCCCCAACCAAACCGGCAATGTCTACTCCTACGGCCGGTCGTCCCTCAGAAAATCATTGTCCTCCTCGCAGAAGTTCCTCCGGCAGGTCCAGAAGTACCTCCGGTCCCGGTCGTCACTGACGGTGGCCGCCGTCAGGGCGCTAGAGGACTGCCAGCTGCTGGCTGGACTGAACATTGATTACTTGACGACGTCGTTCCGGACGGTGAACACGACGAGTTCGACGTTGCCGGAGATGAAGGCCGACGATGTGCAGAGTCTGTTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGATGGGCTTAAGGCGACGGCGGCTTCTTGGTCTGTCAAAAATGGCCTCTCTCTCCCACTTGCCGCTGACACCAAGCTCTACTCTCTTTCCTTGGCTTTATTTACCAAAGGTTGGGTTCCGAAGAAGAAGAAAAGATCGACATGGAAGGCGGCTGGAAAACAGGGCGGGTTCAGAAACGGACGAATGTCGCTCAAAATGTCGAACAGAAACAAAGCTATCTACGAGACTGCGTCTCGCCGGAATCTGCTGCAGACCGACGACGGCGGCGACGATCAGATTTCGGTGAGGGACGTCGTCGTCGTCAGTCAAGACGGCAGTGGAAATTTCACAACTATCAACGAGGCGGTTGCGGCGGCGCCGAACAACTCTGCTCCGACCGACGGGTATTTCTTGATCTTTGTCTCCGCCGGAGTTTATGAAGAAAACGTGTCGATTGCGAAGAACAAGAGATACTTGATGATGATCGGAGATGGCATTAATCAGACTGTCGTTACCGGCAATCGGAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACGCTTGCGGTGGTGGGACCCGGATTCGTAGCAGTAAACATGACATTCAGAAACACCGCCGGAGCAATAAAGCACCAAGCCGTCGCCGTCCGTAACGGTGCCGACTTATCCACTTTCTACCTCTGCAGCTTCGAAGCCTATCAAGACACCTTATACACTCACTCCCTCCGCCAATTCTACCGCGACTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAATATCTACCCTCGCCTTCCGATGGCCAACCAGTTCAACGCCATCACAGCCCAGGGCCGGACCGACCCGAACCAGAACACCGGAACCTCCATCCACAACTGCCGGATCACAGCCGCCGACGACCTGGCCAACAGCACCGGCGCCGCCGTAAAGACGTTCCTGGGGCGGCCGTGGAAGGAGTACTCGAGGACGGTGTATTTGAAGAGCTTTATGGATGATTTGATTAATCCGGCGGGGTGGAGGGCTTGGGATGGGGATTTTGCTCTGAACACTTCGTATTATGCGGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCGGAGAGGGTGAATTGGCCCGGATTTCATTTGATTAATGATACTGATGCTGGGAATTTCACGGCGGCCAATTTTGTTTTGGCCGATGATTGGCTGCCGCAGACCGGCGTTCCGTACACCAGCGGCTTGACGGAGTAG 1671 55.77 MAPTSFYSLILLLSLYITTAAPPPPPTGSVCSSTPDPSYCKSALPNQTGNVYSYGRSSLRKSLSSSQKFLRQVQKYLRSRSSLTVAAVRALEDCQLLAGLNIDYLTTSFRTVNTTSSTLPEMKADDVQSLLSAILTNQQTCLDGLKATAASWSVKNGLSLPLAADTKLYSLSLALFTKGWVPKKKKRSTWKAAGKQGGFRNGRMSLKMSNRNKAIYETASRRNLLQTDDGGDDQISVRDVVVVSQDGSGNFTTINEAVAAAPNNSAPTDGYFLIFVSAGVYEENVSIAKNKRYLMMIGDGINQTVVTGNRSVVDGWTTFNSATLAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMANQFNAITAQGRTDPNQNTGTSIHNCRITAADDLANSTGAAVKTFLGRPWKEYSRTVYLKSFMDDLINPAGWRAWDGDFALNTSYYAEFGNFGPGSNTSERVNWPGFHLINDTDAGNFTAANFVLADDWLPQTGVPYTSGLTE 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6097598 6101282 - Tan0021614.1 Tan06g0778 755482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0778 556 Pfam Pectinesterase 241 538 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan06g0778 556 SMART PMEI_2 22 175 IPR006501 GO:0004857(InterPro)
Tan06g0778 556 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Tan06g0778 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 178 IPR035513 -
Tan06g0778 556 Gene3D - 234 554 IPR012334 -
Tan06g0778 556 FunFam Pectinesterase 28 178 - -
Tan06g0778 556 CDD PMEI-like_3 29 180 - -
Tan06g0778 556 Pfam Plant invertase/pectin methylesterase inhibitor 29 175 IPR006501 GO:0004857(InterPro)
Tan06g0778 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 178 IPR035513 -
Tan06g0778 556 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Tan06g0778 556 PANTHER PECTINESTERASE 5 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan06g0778 556 FunFam Pectinesterase 234 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0778 Tan-Chr6:6097598 Tan07g0203 Tan-Chr7:4599782 2.00E-108 dispersed
Tan06g0778 Tan-Chr6:6097598 Tan06g0779 Tan-Chr6:6141224 9.30E-114 tandem
Tan01g3845 Tan-Chr1:103212726 Tan06g0778 Tan-Chr6:6097598 3.90E-162 transposed
Tan04g0744 Tan-Chr4:6425214 Tan06g0778 Tan-Chr6:6097598 4.80E-142 transposed
Tan07g0985 Tan-Chr7:23190646 Tan06g0778 Tan-Chr6:6097598 7.60E-164 transposed
Tan06g0778 Tan-Chr6:6097598 Tan06g2699 Tan-Chr6:79431027 8.00E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0778 K01051 - csv:101205321 978.008