Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0779 ATGTACGGCCTCAAAAACAGAGCTCAAACCCCTTCAAATCCCTCCTCCATTTCCGCCATTTTCACCTTCTTCTTCTTCTTCTTCCTCTTCTCTTCCAAACCCAGTTCTTCAAATCCCCAAATTCACCAAACCGCTCTCTCCCTCTGCAATGGCACTCTGTACCCAGACCTCTGTTTCTCAAAACTCTCTTCTTTCCCCCAGTTGGCCTCCCTCTCGCCGGAAAAGCTCGCCGGCAGCGCCCTCAACTTCACCTCCGGCGAGGTCCATGGAGCCTACGCCAATTGCACCAAGCTCAAGACTCTCCTCTACGGCGGCCTGAATCCCACCGACCGCCGCGCCCTCGACGACTGTCTTGAGCTTCTCGACGACAGCATTGCCGAGCTCGAAGCTTCGATTTACGATCTGTCGCCGTCGCAGTCCGCCGCCCGCCACTCCCGCGACCTGTTGACCTTTGTCAGCGCGGCCATGACTAATCACCGGACTTGTATTGATGGATTTTATAACAGTTCTGGGACTGTGAGGAGCCGGGTGGAGTTGTATTTGGGGAAAATTGAACAGCATTTGAGTATTGATTTGGCCATGTTGAAGAAAATCCCTGGAGTTAATCGGGCTACGGCCGCGGTGGCGGGGGAGATGTTGCCAGAGTATGGGGCGGTGAGAGGTGGGTTTCCGATGTGGGTTTCGGTTAAGGATCGCAAACTGTTGCAGGCGGCGGTGAATGAGACGAAGTTTGATTTGGTGGTGGCGAAGGACGGCTCCGGGAATTTCACCACTGTCAGTGAGGCGGTCGCCGCCGCTCCGAATTCCAGCACCACCAGGTTTGTAATATACATAAAAGCAGGAGCGTATTTTGAGAACGTGGAAATAGAAAGGAAAAAGACGAACTTGATGTTCGTCGGCGACGGGATCGGAAAGACGTTGATAAAGGGCGACCGGAACGTCGTCGACGGCTGGACTACTTTCCGATCAGCCACTGTCGCGGCGGTTGGCAGCGGGTTGATAGCCAAAGGCATAACATTTGAAAACTTTGCCGGTCCGAGCAAGCACCAAGCCGTAGCCTTCCGAAGCAACTCCGACTTCTCTGCATTTTACCAATGCAGCTTCATCGGCTATCAAGACACGCTCTACGTCCACTCCCTCCGCCAATTCTACCGCGAATGCGACGTCTACGGTACCATCGACTTCATCTTCGGCAATGCTGTGGTCGTCTTTCAAAACTGCAACCTCTATGCCCGAAAACCCAACTCAAACCAACGCAACATATTCACTGCTCAGGGTCGCGAGGACCCAAACCAGAACACAGGAATCTCAATCTTGAATTGCAAGGTTGAAGCTGCCTCTGATCTGATCCCGGTTCTTTCAACATTTAAGACTTACTTGGGCCGACCCTGGAAGTTGTACTCGAGGACGGTTTTTCTCCGATCGTTTATTGGGCAACTAGTTGACCCGACCGGTTGGCTCGAGTGGAATGGGACGTTTGCATTGGACACTTTGTATTATAGGGAGTATTTGAACCGAGGGCCCGGTTCGAATACGAGCACACGTGTTACTTGGCCGGGTTATCGGGTGATTACTAACTCAACCGAAGCGAGTCAGTTTACAGTGGAGGCGTTCATACAGGGTAGCTCATGGTTGAATTCGACCGGGATTCCTTTCTTCTCCGGTTTGGCTTGA 1674 52.57 MYGLKNRAQTPSNPSSISAIFTFFFFFFLFSSKPSSSNPQIHQTALSLCNGTLYPDLCFSKLSSFPQLASLSPEKLAGSALNFTSGEVHGAYANCTKLKTLLYGGLNPTDRRALDDCLELLDDSIAELEASIYDLSPSQSAARHSRDLLTFVSAAMTNHRTCIDGFYNSSGTVRSRVELYLGKIEQHLSIDLAMLKKIPGVNRATAAVAGEMLPEYGAVRGGFPMWVSVKDRKLLQAAVNETKFDLVVAKDGSGNFTTVSEAVAAAPNSSTTRFVIYIKAGAYFENVEIERKKTNLMFVGDGIGKTLIKGDRNVVDGWTTFRSATVAAVGSGLIAKGITFENFAGPSKHQAVAFRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRECDVYGTIDFIFGNAVVVFQNCNLYARKPNSNQRNIFTAQGREDPNQNTGISILNCKVEAASDLIPVLSTFKTYLGRPWKLYSRTVFLRSFIGQLVDPTGWLEWNGTFALDTLYYREYLNRGPGSNTSTRVTWPGYRVITNSTEASQFTVEAFIQGSSWLNSTGIPFFSGLA 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6141224 6150445 + Tan0004218.1 Tan06g0779 755483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0779 557 SMART PMEI_2 41 194 IPR006501 GO:0004857(InterPro)
Tan06g0779 557 SUPERFAMILY Pectin lyase-like 243 555 IPR011050 -
Tan06g0779 557 CDD PMEI-like_3 47 200 - -
Tan06g0779 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 199 IPR035513 -
Tan06g0779 557 FunFam Pectinesterase 239 556 - -
Tan06g0779 557 Gene3D - 239 556 IPR012334 -
Tan06g0779 557 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Tan06g0779 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 200 IPR035513 -
Tan06g0779 557 Pfam Pectinesterase 245 541 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan06g0779 557 Pfam Plant invertase/pectin methylesterase inhibitor 47 194 IPR006501 GO:0004857(InterPro)
Tan06g0779 557 NCBIfam pectinesterase inhibitor domain 19 197 IPR006501 GO:0004857(InterPro)
Tan06g0779 557 PANTHER PECTINESTERASE 22 547 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0107 Tan-Chr1:1054518 Tan06g0779 Tan-Chr6:6141224 4.30E-136 dispersed
Tan05g1933 Tan-Chr5:68039985 Tan06g0779 Tan-Chr6:6141224 1.80E-80 dispersed
Tan06g0779 Tan-Chr6:6141224 Tan07g0472 Tan-Chr7:8595177 1.00E-144 dispersed
Tan06g0778 Tan-Chr6:6097598 Tan06g0779 Tan-Chr6:6141224 9.30E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0779 K01051 - csv:101205557 969.918