Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0851 ATGGATGATCACACAGGCAAGGCAGAGAGATTAGTAGAATTTAAGTATGATTTCTCCACCGGTGGCGGCGGAGGAGTCTGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCTGGTAGCGGTGGCGTCGGGATCGTAAAAGAGCAAGATCGGTTGCTGCCAATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCAAACGCCAAAATCTCAAAGGAAGCCAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTCACCGGGGAGGCGTCGGATAAGTGTCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCCACTCTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCAACAAAATAAGGGTTGTTGCCATAGTAATAGTAATAACCATGATGCAATATGA 480 47.29 MDDHTGKAERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHDAI 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7081433 7082169 - Tan0002362.1 Tan06g0851 755555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0851 159 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0851 159 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Tan06g0851 159 Gene3D Histone, subunit A 44 158 IPR009072 GO:0046982(InterPro)
Tan06g0851 159 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 44 147 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan06g0851 159 FunFam Nuclear transcription factor Y subunit B-3 41 158 - -
Tan06g0851 159 SUPERFAMILY Histone-fold 48 155 IPR009072 GO:0046982(InterPro)
Tan06g0851 159 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Tan06g0851 159 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Tan06g0851 159 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0851 K08065 - - csv:101204763 259.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0851 Tan-Chr6:7081433 Tan08g1924 Tan-Chr8:71507496 1.00E-36 dispersed
Tan06g0851 Tan-Chr6:7081433 Tan06g2651 Tan-Chr6:79030804 4.50E-37 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g1846 . 39 144 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.1 3.2e-47 186.0
Tan05g0985 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.0e-37 154.5
Tan01g1846 . 8 166 CCAAT-HAP3 Transcription Factor Family AT1G21970 59.7 2.0e-49 193.4
Tan05g0985 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.2 5.2e-57 218.0
Tan01g1853 . 33 183 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.9 1.0e-52 203.8
Tan01g1324 . 27 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 8.3e-47 184.1
Tan08g1924 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 6.0e-45 177.9
Tan08g1925 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 6.0e-45 177.9
Tan08g1926 . 22 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.4 6.6e-44 174.5
Tan04g0387 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.4 1.9e-43 172.9
Tan04g0388 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.4 1.9e-43 172.9
Tan04g0389 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.4 1.9e-43 172.9
Tan04g0390 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.4 1.9e-43 172.9
Tan06g0851 . 40 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.6 4.1e-38 155.2
Tan04g0387 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.0 7.7e-50 194.1
Tan04g0388 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.0 7.7e-50 194.1
Tan04g0389 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.0 7.7e-50 194.1
Tan04g0390 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.0 7.7e-50 194.1
Tan08g1926 . 1 125 CCAAT-HAP3 Transcription Factor Family AT2G38880 75.2 1.1e-48 190.3
Tan08g1924 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.2e-48 188.3
Tan08g1925 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.2e-48 188.3
Tan01g1853 . 33 144 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.1 1.8e-43 172.9
Tan05g0985 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.0e-42 169.5
Tan01g1324 . 13 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.1 1.3e-41 166.8
Tan06g0851 . 34 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.0e-38 157.1
Tan06g0851 . 44 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.7
Tan01g1853 . 49 148 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 4.4e-40 161.8
Tan05g0985 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 8.3e-39 157.5
Tan06g2651 . 38 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.5 1.6e-37 153.3
Tan01g1324 . 30 125 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 2.0e-37 152.9
Tan08g1924 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 1.3e-36 150.2
Tan08g1925 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 1.3e-36 150.2
Tan08g1924 . 1 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.6 9.5e-65 243.8
Tan08g1925 . 1 159 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.9 2.1e-59 226.1
Tan04g0387 . 10 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 4.3e-57 218.4
Tan04g0388 . 10 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.5 3.6e-56 215.3
Tan04g0389 . 10 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.5 3.6e-56 215.3
Tan04g0390 . 10 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.5 3.6e-56 215.3
Tan08g1926 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 84.2 1.9e-49 193.0
Tan05g0985 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.9e-44 176.4
Tan01g1853 . 41 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 2.7e-43 172.6
Tan01g1324 . 29 122 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.8 2.8e-40 162.5
Tan06g0851 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.9 4.9e-37 151.8
Tan01g1324 . 17 131 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 3.0e-44 176.0
Tan05g0985 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 5.2e-44 175.3
Tan08g1924 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 8.8e-44 174.5
Tan08g1925 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 8.8e-44 174.5
Tan01g1853 . 53 148 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 1.4e-41 167.2
Tan08g1926 . 7 115 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.2 4.1e-41 165.6
Tan04g0387 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 1.7e-39 160.2
Tan04g0388 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 1.7e-39 160.2
Tan04g0389 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 1.7e-39 160.2
Tan04g0390 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 1.7e-39 160.2
Tan06g0851 . 22 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 62.4 5.0e-39 158.7
Tan05g0985 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 7.8e-52 201.1
Tan01g1853 . 33 151 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.7 1.6e-49 193.4
Tan01g1324 . 25 130 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.2e-44 177.2
Tan04g0387 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 7.8e-44 174.5
Tan04g0388 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 7.8e-44 174.5
Tan04g0389 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 7.8e-44 174.5
Tan04g0390 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 7.8e-44 174.5
Tan08g1924 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 1.0e-43 174.1
Tan08g1925 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 1.0e-43 174.1
Tan08g1926 . 11 116 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.5 3.3e-42 169.1
Tan06g0851 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 77.3 7.5e-39 157.9
Tan08g1924 . 12 173 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.9 8.5e-61 230.7
Tan08g1925 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 3.6e-59 225.3
Tan04g0387 . 12 167 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.1 9.7e-57 217.2
Tan04g0388 . 12 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.7 8.2e-56 214.2
Tan04g0389 . 12 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.7 8.2e-56 214.2
Tan04g0390 . 12 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.7 8.2e-56 214.2
Tan08g1926 . 12 116 CCAAT-HAP3 Transcription Factor Family AT3G53340 88.8 1.3e-48 190.3
Tan05g0985 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 3.8e-45 178.7
Tan01g1853 . 41 188 CCAAT-HAP3 Transcription Factor Family AT3G53340 61.0 1.5e-44 176.8
Tan01g1324 . 18 122 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 9.8e-41 164.1
Tan06g0851 . 20 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 60.9 7.7e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27724 PF00808 CBFD_NFYB_HMF 6.80E-27 CL0012 Tan TF