Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0851 ATGGATGATCACACAGGCAAGGCAGAGAGATTAGTAGAATTTAAGTATGATTTCTCCACCGGTGGCGGCGGAGGAGTCTGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCTGGTAGCGGTGGCGTCGGGATCGTAAAAGAGCAAGATCGGTTGCTGCCAATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCAAACGCCAAAATCTCAAAGGAAGCCAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTCACCGGGGAGGCGTCGGATAAGTGTCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCCACTCTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCAACAAAATAAGGGTTGTTGCCATAGTAATAGTAATAACCATGATGCAATATGA 480 47.29 MDDHTGKAERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHDAI 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7081433 7082169 - Tan0002362.1 Tan06g0851 755555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0851 159 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g0851 159 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Tan06g0851 159 Gene3D Histone, subunit A 44 158 IPR009072 GO:0046982(InterPro)
Tan06g0851 159 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 44 147 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan06g0851 159 FunFam Nuclear transcription factor Y subunit B-3 41 158 - -
Tan06g0851 159 SUPERFAMILY Histone-fold 48 155 IPR009072 GO:0046982(InterPro)
Tan06g0851 159 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Tan06g0851 159 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Tan06g0851 159 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0851 Tan-Chr6:7081433 Tan08g1924 Tan-Chr8:71507496 1.00E-36 dispersed
Tan06g0851 Tan-Chr6:7081433 Tan06g2651 Tan-Chr6:79030804 4.50E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27724 PF00808 CBFD_NFYB_HMF 6.80E-27 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0851 K08065 - csv:101204763 259.61