Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0852 ATGGGAATCTCAAACATTACAGGTGAAGATCATCATGGCAACTTGTCTTCAGCAAATAGTGTGGAAGATCAAGAAGTTGAACAAAACAAACAGCATGAGCTTCTCAATCACTTCCTCTATGGCTCTCCCAATGATGATCAAGATCATCAAACCAACACCCATGGCTCATCTTCACTTCACCAACAAAGATCAGTTAAGAAGAAGCGGAATCTTCCTGGCACTCCAGATCCAAATGCTGAAGTTATTGCTCTATCACCAACAACCCTAATGGCCACAAATAGGTTTGTGTGTGAGATTTGCAACAAGGGGTTTCAAAGAGATCAAAACCTTCAATTGCACAGGAGAGGCCACAACCTTCCATGGAAACTCCGGCAAAGGACCGGCGCCGAAGTGAAGAAAAGGGTCTACGTGTGCCCCGAACCGACGTGCGTTCATCACAACCCAGCTCGAGCTCTCGGCGATCTTACCGGAATTAAGAAACATTTTAGTAGAAAACATGGGGAGAAGAAATGGAAATGTGAGAAATGCTCCAAGAAATATGCAGTTCAGTCTGATTGGAAAGCTCATCAAAAGACCTGTGGTACTAGAGAATACAAATGTGATTGTGGAACTGTCTTTTCCAGGTTTTGA 630 43.65 MGISNITGEDHHGNLSSANSVEDQEVEQNKQHELLNHFLYGSPNDDQDHQTNTHGSSSLHQQRSVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGAEVKKRVYVCPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHQKTCGTREYKCDCGTVFSRF 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7114081 7114984 + Tan0007237.1 Tan06g0852 755556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0852 209 Gene3D Classic Zinc Finger 73 141 - -
Tan06g0852 209 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 132 166 - -
Tan06g0852 209 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Tan06g0852 209 Pfam Zinc-finger of C2H2 type 95 117 IPR013087 -
Tan06g0852 209 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 50 208 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan06g0852 209 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 170 194 - -
Tan06g0852 209 Gene3D Classic Zinc Finger 149 209 - -
Tan06g0852 209 MobiDBLite consensus disorder prediction 1 24 - -
Tan06g0852 209 MobiDBLite consensus disorder prediction 43 60 - -
Tan06g0852 209 FunFam protein indeterminate-domain 12-like 74 142 - -
Tan06g0852 209 MobiDBLite consensus disorder prediction 1 79 - -
Tan06g0852 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Tan06g0852 209 SUPERFAMILY beta-beta-alpha zinc fingers 94 192 IPR036236 -
Tan06g0852 209 SMART c2h2final6 95 117 IPR013087 -
Tan06g0852 209 SMART c2h2final6 136 166 IPR013087 -
Tan06g0852 209 SMART c2h2final6 171 191 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0852 Tan-Chr6:7114081 Tan09g0200 Tan-Chr9:11128365 5.90E-77 dispersed
Tan06g0852 Tan-Chr6:7114081 Tan01g4896 Tan-Chr1:114873037 2.60E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27725 PF12171 zf-C2H2_jaz 4.90E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0852 - - - 0.0