Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0938 ATGCTTCCGTGGGGAGGTCTCAGTTGCTGTTTGAGTGCAGCTGCTCTTTATCTTCTTGGGAGGAGTAGTGGCCGCGATGCGGAGTTGCTGAAATCTGTTACGCGGGTCGATCAATTGAAGGAATTGGCTCAGTTGCTTGAGGCTGAATGTGTATTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATACACCAATAAATTGCGAGTTTAGTGGTTTGCGGGGTGTAATTGTGGAGGAAACGGCAGAACAGCACTTTCTAAAGCACAACGATGCAGGATCATGGATTCAGGATTCTGCACTGATGCTCTCCATGAGCAAAGAAGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGCATTTGTGGTGGGAGCTCGAAGTGCCACAAATTTTATATTACCAGTAGTGAGTGAGGTATTTGAAGAGTCTGGCAGGTCCCTTATGCGTGGAACTTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAGCGTGTACTACCTACTGGTACTTCCTTGACTGTCGTTGGTGAGGCTGCCAAAGATGACATTGGTACCATCAGAATACAGCGACCACACAAAGGGCCATTTTATGTCTCCCCAAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCCATGGGTTTGAGCATATTTGGATTGTATCTCGTCACAAAGCATGCTATTCTTTATCTCATGGAGAGAAGGCGTCGCTGGGAATTGCAGAAAAGGGTCCTAGCTGCAGCTGCCAAGAGATCAAGCCAAGAAAATGAAGGGGTAAATGATAAGGCAAACAATGGATCAGATGGTACGAAGAGAGACCGTTCAATGCCAGATCTTTGTGTAATATGTCTTGAGAGAGACTACAACGCTGTTTTTGTCCCGTGCGGCCATATGTGCTGCTGTGTAGCATGTTGTTCACATTTAACAAACTGTCCACTATGCCGTCGACGAATTGAGCTGGTAGTAAAGACTTTCCGCCATTGA 1029 45.87 MLPWGGLSCCLSAAALYLLGRSSGRDAELLKSVTRVDQLKELAQLLEAECVLPLVVAISGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARSATNFILPVVSEVFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASMGLSIFGLYLVTKHAILYLMERRRRWELQKRVLAAAAKRSSQENEGVNDKANNGSDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTFRH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7973479 7994984 - Tan0014509.1 Tan06g0938 755642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0938 342 PANTHER - 1 338 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan06g0938 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Tan06g0938 342 SUPERFAMILY RING/U-box 294 336 - -
Tan06g0938 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 341 IPR013083 -
Tan06g0938 342 Pfam E3 Ubiquitin ligase 85 235 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Tan06g0938 342 MobiDBLite consensus disorder prediction 266 288 - -
Tan06g0938 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0675 Tan-Chr10:5481463 Tan06g0938 Tan-Chr6:7973479 8.90E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0938 K15688 - csv:101218196 654.055