Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g0978 ATGGAGGAGGAGTTGAGTGCTGAGAAGCTGTTGAGGAAGGCGAAAGGAGATGGTTTCGATTTTGATCGTGTATTGGATGAGGAGGGGAATGAAGCGGGGTTGAGGAATCTTCATGTAGATGTTGAGCAAAATCTGCATTCGGTTTCTATCAGCTGTGACTCTGAGAGAGAGTCGTTGGAGACTGAATTCGAGAAGGGATATCAGGCTGGAGTTGAGGAAGTTATGGTGGATGTCTTTAAGGGTGGTGGGGAAAATGCTGAAGTGGAGAATAGGAGTAGGAAAAGGAGGAAGGTGGATGATGGCCACATTAAAGATAAAAGTAAAAAGGTAGTGGAGAAAGTGAAAAGAAAACTTATGGCTGATAAAATAAGGGGTAGTGATCGGATTTTGCGGTCGAGTTTTGCAGTGAAGACAGAGTGCAGTAGTGTAGCTGATAGTGAAGAGAATAACAGTAGTATGGCGGTGCAGAGTTGTAGGAGCAGTAGGTATGACAAGAAATTAGTGAAGTTGGAGAGGGGAAGAGATAGTGAATTGTTCTCTGGGGATCAGAAGGTAAAAAGAAAGCGTGGGAGACCGCGAAAGGTGGAAAAAGAAGCCGAGGAAGTAGTTGTTAGCCCTATGAAGAAGTTGAAACGGAAGCGTGGAAGACCACCCAAGATGGAGAGCGAAAACAACCATCAATTTGTCTGTGGGTTGAAGAATAAGTTGAAAAGGAAGCGTGGGAGACCGCCCAAGACTGAAAAGGAAAATGTCAATTCATTGTCTGTTGGATTGGATACCTTGAAACCTAGGTGTGGAAGACAAAATGATAATCCATTGTCTGGTGGATTGGATACCTTGAAACCTAGGCGTGGAAGACCACCCAAGTTGAAGCAAAGCAATGAAGCTCTGAAGGATGAGCATACTGAGGGAAGAAAGGTCAGGTTGGCGAGAAAATTAAGTATGAAGTTGAGAAACAGGGTGAGGAATAATGTACCAACTGATTGTATATCTGCAGATAAAAGGCTTATTAGGAAGGTAATAAACATGAAAAGAACTTTGCCAGCTGAAAAAAATTTATCTCAGGAATATTTGGAACCAGAGGCAGCAGTAACAGAAAGTTCAAAGGTCTCATGTGGTGACAAGATTAAGGAAGTGAAGAAAGTAGAAAAGCCCAAGATCAAAGGAGATGAATGCAGTAAATCTACAGCAAAAAATATATTGAGAGAGAGGATTACTGAAATATTAAAAACTGCTGGTTGGACAATTCAGTATAGGCCCAGATTTAATCGAGAGTACAAGGATGCAGTTTATGTAAGTCCCGAGGGACGAACTCACTGGTCAATAACCTTGGCTTATAATGTGCTTAAAAGGCACTATGAAGTAGGTGATGGTGATTCTAAAGTTTATAAGACTGGTTTTATATTTACTCCAATACCAGAGGAAGAAATCAAGATACTAACAAGGGTTACGAAAGCAAGGAAGAACGAAGAATTGAAGAATCAAAAGAGAAATGGAAAATTAAAAATGAAAGGGTTCATTGAAAAGGCAAAAGCAAGGAGTCCAGATTCTAAGTCGATGAAGAGGAAGAGGAAAAAAGATACGTCACAGAACGAGCTTGATAATTCAGACCAAAACCTAGAAAAGGAGTTTCCTAGTTCATTTCGGACAAAAAATAGAAAGCGATGTGCTTTGTTGGTTAGAAATACAGAGGAAAGCGCCAATGCAAGCAATGATGGGTATTTACTATATAATGGGAAGCGGACACTACTTGCGTGGATGATAGATTTGGGGATCTTATCACTTGATGAGAAGGTACAGTACATGAATCAAAGAAAGACTCGGGTGAAGCTTGAGGGTAGACTTACAAGAGATGGAATTCATTGCAACTGCTGTGATGAAGTTATTACAATTTCAAAATTTGAAATGCATGCAGGAAGCAAACTTGGTCAGCCACTTGAAAATATATGTGTACAGACCGGTTCTTCCCTTCTCCAACGCCTGATGGAATCATGGAATAAACAAAATGAACCACAATGTAAAGGGTATAATCTTGTAGATGTTGATGTCGAAGATCCTAATGATGATACTTGTGGAATTTGTGGAGATGGGGGAGACTTGATTTGTTGTGATAGTTGTCCATCTACGTTTCATCAAAGTTGCTTGGGTATTAAGAAGTTTCCTTCTGGTCCCTGGCACTGTTTGTATTGTTCATGCAAATCATGTGGACAAGTCACACCGGGTTTACATCCAAGGGATGATACTCATGAGGCTGATACAGCTGTGTTAAGTAAATGCCATCTCTGCGAGGAAAAATATCATTCCACATGTGTTCAGACAAATGATGCTTCTGGTGATGACGTGAATAACCCATTGTTCTGCGGGAAGAAATGTCAAATGTTACATGAAAGGCTACAAAAACTTGTTGGTGTTAAGCATGATATGGAAGAAGGATTTTCATGGACTCTTATTCGTAGAAGTGATGTTGGCTCTGATGTTAGTCTCTGCAGTGAAGTAGCTCAGAAGGTTCAATGTAATTCCAAGCTTGCAGTTGCTTTGTTTGTTATGGACGAGTGCTTTTTACCTATCATTGACCACAGAAGTGGCATCAATTTGATTCATAACATTCTCTATAATTGTGGGTCAAATTTTACTCGTCTAAATTTTAGTGGTTTTTACACTGCAATTCTTGAAAAGGATGACGAGATGATATGTGCTGCATCCTTAAGGATCCATGGAAATGAATTAGCGGAGATGCCATTCATTGGAACTCGTTATATGTATAGGCGTCAGGGAATGTGCCGTCGCTTTCTTAGTGTGATTGAATCGGCTTTGTACTCTCTAAATGTTGAGAAGTTGGTCATTCCCGCAATATCTGAACTAAAAGATACATGGACTTCTGTTTTTGGTTTCAAGCCCCTTGAAGAGACTAGCAAGCAAAGGATGAGAAGCATGAGTCTGTTGGTCTTTCCTGGTGTAGAAATGCTGCAGAAACCACTATTGAAGGATCATCTTCCGATGGAATGTACACCTCTTGCAGAAGGTTCTGAGTCCCCTCAACTTGCAGAACGACAAAAGTCAGAGGTCGTTGAAACATCTCCTGAAGAGAGTCATTCTCCTGGGCCTTGTTTTAATTCATGCAGTGAGCGCACTGCACGTCATGGATTTGGGATTTCTGGTGAACCTGCAGTTGTTGAATCCAGTGTTAAACCAAATGATAAGATCTTGAACGATGATATGGATAATCCTACTAACAATATCAAAGCCCACAATTTTGGGGAAAGGAACCGAAGTTTTGATAACTCGTGCTCTGCATGCCTTACATGTGAGGAAGCTAAAGAGGCTGGCCAATATCAAACTACTTCTCTTGGTTCTACCATTTCAGACCTTGAAGACCGGACGTCTGAACTAAATGGACAGTTGGATGGAAACTCAACAATTGATCAAAAGTCCAGCCTGGAATGCCCCAAAGGTACTGCAAGTGTTGATTCCCAGGAGTCTGCAGAAGTTGGTATACCTAATGACAAACTCAAGTCTACTCATGATGTGCATGTAAATCAGTCGGACACAATCAGCTGTAGTAACCCGCAAGAGACTGCTTCTGTACACGATGGACAAACAATTCTCTTTGATTCAGAAATTGTAAATGGTAGCAATGCCACTTCACAGATGGACGATAAAACTAGTTCTCCCTCCGAAGATGATAGGCTTAATGCACACGTTGACTCTGCTAAAGTTTCTTCTAATTGCCATCCAACGGAGGACATTGTTGTAGGCTGA 3759 40.99 MEEELSAEKLLRKAKGDGFDFDRVLDEEGNEAGLRNLHVDVEQNLHSVSISCDSERESLETEFEKGYQAGVEEVMVDVFKGGGENAEVENRSRKRRKVDDGHIKDKSKKVVEKVKRKLMADKIRGSDRILRSSFAVKTECSSVADSEENNSSMAVQSCRSSRYDKKLVKLERGRDSELFSGDQKVKRKRGRPRKVEKEAEEVVVSPMKKLKRKRGRPPKMESENNHQFVCGLKNKLKRKRGRPPKTEKENVNSLSVGLDTLKPRCGRQNDNPLSGGLDTLKPRRGRPPKLKQSNEALKDEHTEGRKVRLARKLSMKLRNRVRNNVPTDCISADKRLIRKVINMKRTLPAEKNLSQEYLEPEAAVTESSKVSCGDKIKEVKKVEKPKIKGDECSKSTAKNILRERITEILKTAGWTIQYRPRFNREYKDAVYVSPEGRTHWSITLAYNVLKRHYEVGDGDSKVYKTGFIFTPIPEEEIKILTRVTKARKNEELKNQKRNGKLKMKGFIEKAKARSPDSKSMKRKRKKDTSQNELDNSDQNLEKEFPSSFRTKNRKRCALLVRNTEESANASNDGYLLYNGKRTLLAWMIDLGILSLDEKVQYMNQRKTRVKLEGRLTRDGIHCNCCDEVITISKFEMHAGSKLGQPLENICVQTGSSLLQRLMESWNKQNEPQCKGYNLVDVDVEDPNDDTCGICGDGGDLICCDSCPSTFHQSCLGIKKFPSGPWHCLYCSCKSCGQVTPGLHPRDDTHEADTAVLSKCHLCEEKYHSTCVQTNDASGDDVNNPLFCGKKCQMLHERLQKLVGVKHDMEEGFSWTLIRRSDVGSDVSLCSEVAQKVQCNSKLAVALFVMDECFLPIIDHRSGINLIHNILYNCGSNFTRLNFSGFYTAILEKDDEMICAASLRIHGNELAEMPFIGTRYMYRRQGMCRRFLSVIESALYSLNVEKLVIPAISELKDTWTSVFGFKPLEETSKQRMRSMSLLVFPGVEMLQKPLLKDHLPMECTPLAEGSESPQLAERQKSEVVETSPEESHSPGPCFNSCSERTARHGFGISGEPAVVESSVKPNDKILNDDMDNPTNNIKAHNFGERNRSFDNSCSACLTCEEAKEAGQYQTTSLGSTISDLEDRTSELNGQLDGNSTIDQKSSLECPKGTASVDSQESAEVGIPNDKLKSTHDVHVNQSDTISCSNPQETASVHDGQTILFDSEIVNGSNATSQMDDKTSSPSEDDRLNAHVDSAKVSSNCHPTEDIVVG 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8594590 8608187 + Tan0018120.1 Tan06g0978 755682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g0978 1252 PANTHER PHD FINGER PROTEIN 12 302 1098 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Tan06g0978 1252 ProSitePatterns Zinc finger PHD-type signature. 691 730 IPR019786 -
Tan06g0978 1252 MobiDBLite consensus disorder prediction 1131 1161 - -
Tan06g0978 1252 Pfam Domain of unknown function (DUF7028) 371 452 IPR054292 -
Tan06g0978 1252 SMART AT_hook_2 186 198 IPR017956 GO:0003677(InterPro)
Tan06g0978 1252 SMART AT_hook_2 211 223 IPR017956 GO:0003677(InterPro)
Tan06g0978 1252 SMART AT_hook_2 237 249 IPR017956 GO:0003677(InterPro)
Tan06g0978 1252 SMART AT_hook_2 281 293 IPR017956 GO:0003677(InterPro)
Tan06g0978 1252 Pfam Tify domain binding domain 613 663 IPR032308 -
Tan06g0978 1252 CDD PHD4_NSD 691 730 - -
Tan06g0978 1252 Pfam PHD-finger 691 730 IPR019787 -
Tan06g0978 1252 PRINTS AT-hook-like domain signature 209 220 IPR017956 GO:0003677(InterPro)
Tan06g0978 1252 PRINTS AT-hook-like domain signature 186 196 IPR017956 GO:0003677(InterPro)
Tan06g0978 1252 PRINTS AT-hook-like domain signature 235 245 IPR017956 GO:0003677(InterPro)
Tan06g0978 1252 MobiDBLite consensus disorder prediction 233 252 - -
Tan06g0978 1252 MobiDBLite consensus disorder prediction 179 226 - -
Tan06g0978 1252 Pfam AT hook motif 186 197 IPR017956 GO:0003677(InterPro)
Tan06g0978 1252 Pfam AT hook motif 211 222 IPR017956 GO:0003677(InterPro)
Tan06g0978 1252 Pfam AT hook motif 237 248 IPR017956 GO:0003677(InterPro)
Tan06g0978 1252 SMART PHD_3 732 792 IPR001965 -
Tan06g0978 1252 SMART PHD_3 690 731 IPR001965 -
Tan06g0978 1252 SUPERFAMILY FYVE/PHD zinc finger 679 739 IPR011011 -
Tan06g0978 1252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 790 IPR013083 -
Tan06g0978 1252 MobiDBLite consensus disorder prediction 1208 1229 - -
Tan06g0978 1252 MobiDBLite consensus disorder prediction 1004 1039 - -
Tan06g0978 1252 ProSiteProfiles Zinc finger PHD-type profile. 688 733 IPR019787 -
Tan06g0978 1252 MobiDBLite consensus disorder prediction 282 305 - -
Tan06g0978 1252 MobiDBLite consensus disorder prediction 503 545 - -
Tan06g0978 1252 MobiDBLite consensus disorder prediction 193 208 - -
Tan06g0978 1252 MobiDBLite consensus disorder prediction 259 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g0978 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4335 Tan-Chr1:108220616 Tan06g0978 Tan-Chr6:8594590 3.70E-111 dispersed
Tan01g4336 Tan-Chr1:108220616 Tan06g0978 Tan-Chr6:8594590 3.50E-109 dispersed
Tan01g4692 Tan-Chr1:112857518 Tan06g0978 Tan-Chr6:8594590 2.20E-67 transposed
Tan05g0494 Tan-Chr5:3384629 Tan06g0978 Tan-Chr6:8594590 2.50E-77 transposed
Tan06g0978 Tan-Chr6:8594590 Tan06g2523 Tan-Chr6:77838475 6.60E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
Vvi7g89 . . . Bda10g00577 . . . . Cmo08g00335 Cmo17g01163 . . . . . Cpe17g00858 . . . . . . . . Cla09g00660 Cam09g0695 Cec09g0686 Cco09g0684 Clacu09g0704 . Cre09g0673 Cone17ag0558 Cone20ag0858 . . Lsi02g02282 Csa07g01711 . Cme01g02078 . . . . Bpe10g00402 . . . Sed09g1123 . . Cma08g00340 Cma17g01186 Car08g00305 Car17g01118 . Cpe12g01032 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . . . Chy01g01576 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006471 1 2 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38