Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1006 ATGGATTTAACTAATGGGGGTGAGCCTGGCGACGCTCGGGTAGCTAAGAATTCTGGTAATCTAGGAGCGGATATTGTTTCTGGTAAGTCTAGTAATCCCCAAGAGAAGAATTTGGGTTCAAAATTGGGGACAGGAAGCAAAAGCAGCAAGGATATGGTTTTTAGAGCTGATAAGATTGATTTCAAGAATTGGGATATTCAGCTGGACAAGCACTTAAGCAGGGCTTGGTCAAGGGACAGGGAAGTGCCTGCCAAAAAGGAAGAATGGGAGATTGACTTGTCTAAACTTGATATAAGATATGTCAAAGCTCATGGAACTTATGGTACTATTTACAGAGGAAATTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGGGAGGATGGCGTTTCCTCAGTTGCTGAAATTGCTGCTCTACGAACATCTTTTCGCCAGGAAGTTGCTGTTTGGCATAAGCTTGACCATCCCAATGTTGCAAAGTTTTTTGGAGCATCAATGGGGACGTCCAACCTAAAAATCCCTTCTCAAAACTCATCAATTGATAGTAACCAATCTTTTCCTTCAAGGGCTTGTTGCGTTGTTGTTGAATATCTTCCCGGTGGAACATTGAAGAGCTTTTTAATCAAAAACAGGAAAAAGAAACTTGCATTTAAGGTTGTGATTCAACTTGTTTTGGATCTTTCTAGAGGTTTGAGTTATTTACACTCCAAAAAGATTGTACATCGTGATATTAAAACAGAAAATGTGCTCCTAGATGCTCAAAAGACTCTGAAAATTGTTGATTTTGGTGTTGCCCGAGTTGAAGCACAAAACCCAAGGGATATGACGGGGGAGACTGGCACCCTCGGTTACATGGCCCCCGAGGTCCTTGATGGTAAACCTTATAATCGTAAATGTGACGTTTATAGTTTTGGTATATGTTTATGGGAAACATATTGTTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAGTGTCATCTGCAGTTGTGCGACAGAATTTACGACCAGAAATTCCTAGATGCTGCCCAAGTTCCTTTGCAAGCATCATGAGAAGATGTTGGGATGCAAATCCAGAAAGGCGACCTGACATGGACGAGGTTGTAAGATTGTTGGAAGCTATTGATACGAGCAAGGGAGGTGGCATGATACCTGAAGATCAAACAACTGGTTGTTTTTGTTTCAGCGTGGTTCGTGGTCCTTAA 1212 41.83 MDLTNGGEPGDARVAKNSGNLGADIVSGKSSNPQEKNLGSKLGTGSKSSKDMVFRADKIDFKNWDIQLDKHLSRAWSRDREVPAKKEEWEIDLSKLDIRYVKAHGTYGTIYRGNYDGNDVAVKVLDWGEDGVSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFFGASMGTSNLKIPSQNSSIDSNQSFPSRACCVVVEYLPGGTLKSFLIKNRKKKLAFKVVIQLVLDLSRGLSYLHSKKIVHRDIKTENVLLDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQNLRPEIPRCCPSSFASIMRRCWDANPERRPDMDEVVRLLEAIDTSKGGGMIPEDQTTGCFCFSVVRGP 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8848266 8852689 - Tan0004896.1 Tan06g1006 755710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1006 403 Pfam Protein tyrosine and serine/threonine kinase 104 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g1006 403 CDD STKc_MAP3K-like 103 374 - -
Tan06g1006 403 PRINTS Tyrosine kinase catalytic domain signature 197 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g1006 403 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g1006 403 PRINTS Tyrosine kinase catalytic domain signature 235 253 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g1006 403 PRINTS Tyrosine kinase catalytic domain signature 345 367 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g1006 403 FunFam Kinase suppressor of Ras 1 85 180 - -
Tan06g1006 403 SUPERFAMILY Protein kinase-like (PK-like) 78 374 IPR011009 -
Tan06g1006 403 Gene3D Transferase(Phosphotransferase) domain 1 200 388 - -
Tan06g1006 403 SMART serkin_6 96 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1006 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g1006 403 FunFam Serine/threonine-protein kinase HT1 200 385 - -
Tan06g1006 403 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 43 375 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Tan06g1006 403 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1006 403 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Tan06g1006 403 MobiDBLite consensus disorder prediction 23 47 - -
Tan06g1006 403 MobiDBLite consensus disorder prediction 1 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1006 Tan-Chr6:8848266 Tan10g0803 Tan-Chr10:6778818 9.60E-177 dispersed
Tan06g1006 Tan-Chr6:8848266 Tan06g1007 Tan-Chr6:8848266 1.30E-165 tandem
Tan10g0802 Tan-Chr10:6778818 Tan06g1006 Tan-Chr6:8848266 4.60E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67763 PF07714 PK_Tyr_Ser-Thr 1.20E-56 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1006 - - - 0.0