Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1021 ATGTTTGCTGCAACTATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGCGTCTCTTCTGGCACAAGAGTCCAGCCAGCTGATTTCAGCTGCTTAAACCCTCTCCTTCCAACTTTTTCTGATATCCACCACCCACCACAAAAGGTCAAGAAGAAGCGAAGCCTCCCCGGGAATCCAGACCCAGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTTCTAGCGACAAATAGATTTGTGTGTGAGATATGCAACAAGGGTTTTCAAAGGGATCAAAATTTGCAGCTGCATAGGAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCAGAGCCAACTTGTGTTCATCATCATCCTTCAAGAGCTTTAGGAGATCTCACAGGAATCAAAAAACATTACTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGATAAATGTTCTAAAGTCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTCATTACCCATAGAGCCTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCATTTGGCTATGGCTGCGGCCGCCACCGCCGCCACCACCATAAACCCGTCGTCGGTCACTGCCGCCCAATCTCTCGTCTCTTTTGGTAGTCATCACCAATTCTCGAATTTATCATTGCCACTGCCACCGCCACCGCCGTCGCAAACCCATATGTCCCTAAACCCTTGGGACCATCCCCAAAACCGTAACCCTAATCACACCCTCCAAATCATCAAGCCTGAAGACTCACATTCTCATCCTCATTCCCATTTTCACCAAATTCCAGCTTTGCCCCTATCCAATTCCACCACCAACCATTTTGGTATAATTCAAGACCACCACAAGGCAGGCTCTTCATCCTCCTCTTCCATGATAACCTCACCATTCAGGAACCTCCACGTGTCGATGCAACCGACCTCGAATGCTGCCACGTCAGCTCACCTATCAGCCACAGCCCTACTCCAAAAGGCTGCAACAGTTGGAGTTGGGGCTGCAAAATCCGCTCACCATCAGCTCGAGTCAGTGGGCCACATGACTCACTTCAACATGCCCGGTGTCGCCGAGTTCGGCGCACCAACTCACATTGACTCGCTCACTCGTCAACTCGGTCCCGATTATGCCACGTGGCAAAAGAGTGATCGGTTGACTAGGGACTTCCTCGGTTTGACCGGAGATGGGAACGGCGGTGAAGGCGGTGGTTCCAGCGGTGGCCGTGGAGGGGTGCAGGTTAGCATGAGTGTTAAGGATATGCTAACGTACGCAGGGGGATTGGAGATGTTTAAGCCTCATCATCATCATAATAGTGCTTTTGGTTATACGGAGCCAGCTGCCAATGAAACTTGGGACTGCTGA 1479 48.48 MFAATMSNSTSLSEEASVSSGTRVQPADFSCLNPLLPTFSDIHHPPQKVKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPTCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANHLAMAAAATAATTINPSSVTAAQSLVSFGSHHQFSNLSLPLPPPPPSQTHMSLNPWDHPQNRNPNHTLQIIKPEDSHSHPHSHFHQIPALPLSNSTTNHFGIIQDHHKAGSSSSSSMITSPFRNLHVSMQPTSNAATSAHLSATALLQKAATVGVGAAKSAHHQLESVGHMTHFNMPGVAEFGAPTHIDSLTRQLGPDYATWQKSDRLTRDFLGLTGDGNGGEGGGSSGGRGGVQVSMSVKDMLTYAGGLEMFKPHHHHNSAFGYTEPAANETWDC 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9141105 9145157 + Tan0005945.1 Tan06g1021 755725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1021 492 SMART c2h2final6 155 175 IPR013087 -
Tan06g1021 492 SMART c2h2final6 120 150 IPR013087 -
Tan06g1021 492 SMART c2h2final6 79 101 IPR013087 -
Tan06g1021 492 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Tan06g1021 492 MobiDBLite consensus disorder prediction 42 61 - -
Tan06g1021 492 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Tan06g1021 492 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 154 178 - -
Tan06g1021 492 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Tan06g1021 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 436 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan06g1021 492 MobiDBLite consensus disorder prediction 431 450 - -
Tan06g1021 492 FunFam protein indeterminate-domain 12-like 58 126 - -
Tan06g1021 492 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 181 218 - -
Tan06g1021 492 Gene3D Classic Zinc Finger 58 127 - -
Tan06g1021 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Tan06g1021 492 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
Tan06g1021 492 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 116 150 - -
Tan06g1021 492 Gene3D Classic Zinc Finger 148 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0400 Tan-Chr2:3416286 Tan06g1021 Tan-Chr6:9141105 9.60E-85 dispersed
Tan03g1964 Tan-Chr3:74745935 Tan06g1021 Tan-Chr6:9141105 3.30E-89 dispersed
Tan05g0934 Tan-Chr5:7583683 Tan06g1021 Tan-Chr6:9141105 1.00E-86 dispersed
Tan06g1021 Tan-Chr6:9141105 Tan08g1892 Tan-Chr8:71233370 6.80E-84 dispersed
Tan06g1021 Tan-Chr6:9141105 Tan06g1022 Tan-Chr6:9141105 4.70E-242 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27731 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1021 K25870 - csv:101208253 704.516