Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1022 ATGTGTGTATGTTTCTTGAGAAACGAGAAATTGAATAGGTTTGAATGGGATCTTTATCTCGTTGTAGACCCAGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTTCTAGCGACAAATAGATTTGTGTGTGAGATATGCAACAAGGGTTTTCAAAGGGATCAAAATTTGCAGCTGCATAGGAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCAGAGCCAACTTGTGTTCATCATCATCCTTCAAGAGCTTTAGGAGATCTCACAGGAATCAAAAAACATTACTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGATAAATGTTCTAAAGTCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTCATTACCCATAGAGCCTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCATTTGGCTATGGCTGCGGCCGCCACCGCCGCCACCACCATAAACCCGTCGTCGGTCACTGCCGCCCAATCTCTCGTCTCTTTTGGTAGTCATCACCAATTCTCGAATTTATCATTGCCACTGCCACCGCCACCGCCGTCGCAAACCCATATGTCCCTAAACCCTTGGGACCATCCCCAAAACCGTAACCCTAATCACACCCTCCAAATCATCAAGCCTGAAGACTCACATTCTCATCCTCATTCCCATTTTCACCAAATTCCAGCTTTGCCCCTATCCAATTCCACCACCAACCATTTTGGTATAATTCAAGACCACCACAAGGCAGGCTCTTCATCCTCCTCTTCCATGATAACCTCACCATTCAGGAACCTCCACGTGTCGATGCAACCGACCTCGAATGCTGCCACGTCAGCTCACCTATCAGCCACAGCCCTACTCCAAAAGGCTGCAACAGTTGGAGTTGGGGCTGCAAAATCCGCTCACCATCAGCTCGAGTCAGTGGGCCACATGACTCACTTCAACATGCCCGGTGTCGCCGAGTTCGGCGCACCAACTCACATTGACTCGCTCACTCGTCAACTCGGTCCCGATTATGCCACGTGGCAAAAGAGTGATCGGTTGACTAGGGACTTCCTCGGTTTGACCGGAGATGGGAACGGCGGTGAAGGCGGTGGTTCCAGCGGTGGCCGTGGAGGGGTGCAGGTTAGCATGAGTGTTAAGGATATGCTAACGTACGCAGGGGGATTGGAGATGTTTAAGCCTCATCATCATCATAATAGTGCTTTTGGTTATACGGAGCCAGCTGCCAATGAAACTTGGGACTGCTGA 1368 47.88 MCVCFLRNEKLNRFEWDLYLVVDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPTCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANHLAMAAAATAATTINPSSVTAAQSLVSFGSHHQFSNLSLPLPPPPPSQTHMSLNPWDHPQNRNPNHTLQIIKPEDSHSHPHSHFHQIPALPLSNSTTNHFGIIQDHHKAGSSSSSSMITSPFRNLHVSMQPTSNAATSAHLSATALLQKAATVGVGAAKSAHHQLESVGHMTHFNMPGVAEFGAPTHIDSLTRQLGPDYATWQKSDRLTRDFLGLTGDGNGGEGGGSSGGRGGVQVSMSVKDMLTYAGGLEMFKPHHHHNSAFGYTEPAANETWDC 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9141105 9145157 + Tan0005945.2 Tan06g1022 755726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1022 455 SMART c2h2final6 118 138 IPR013087 -
Tan06g1022 455 SMART c2h2final6 83 113 IPR013087 -
Tan06g1022 455 SMART c2h2final6 42 64 IPR013087 -
Tan06g1022 455 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Tan06g1022 455 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 117 141 - -
Tan06g1022 455 Gene3D Classic Zinc Finger 111 176 - -
Tan06g1022 455 Pfam Zinc finger, C2H2 type 42 64 IPR013087 -
Tan06g1022 455 FunFam protein indeterminate-domain 12-like 21 89 - -
Tan06g1022 455 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 79 113 - -
Tan06g1022 455 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 399 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan06g1022 455 SUPERFAMILY beta-beta-alpha zinc fingers 41 138 IPR036236 -
Tan06g1022 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 64 IPR013087 -
Tan06g1022 455 MobiDBLite consensus disorder prediction 394 413 - -
Tan06g1022 455 FunFam protein indeterminate-domain 5, chloroplastic-like 96 175 - -
Tan06g1022 455 Gene3D Classic Zinc Finger 23 90 - -
Tan06g1022 455 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 144 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1022 Tan-Chr6:9141105 Tan08g1892 Tan-Chr8:71233370 8.50E-81 dispersed
Tan06g1021 Tan-Chr6:9141105 Tan06g1022 Tan-Chr6:9141105 4.70E-242 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27732 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1022 K25870 - csv:101208253 620.928