Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g1022 | ATGTGTGTATGTTTCTTGAGAAACGAGAAATTGAATAGGTTTGAATGGGATCTTTATCTCGTTGTAGACCCAGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTTCTAGCGACAAATAGATTTGTGTGTGAGATATGCAACAAGGGTTTTCAAAGGGATCAAAATTTGCAGCTGCATAGGAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCAGAGCCAACTTGTGTTCATCATCATCCTTCAAGAGCTTTAGGAGATCTCACAGGAATCAAAAAACATTACTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGATAAATGTTCTAAAGTCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTCATTACCCATAGAGCCTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCATTTGGCTATGGCTGCGGCCGCCACCGCCGCCACCACCATAAACCCGTCGTCGGTCACTGCCGCCCAATCTCTCGTCTCTTTTGGTAGTCATCACCAATTCTCGAATTTATCATTGCCACTGCCACCGCCACCGCCGTCGCAAACCCATATGTCCCTAAACCCTTGGGACCATCCCCAAAACCGTAACCCTAATCACACCCTCCAAATCATCAAGCCTGAAGACTCACATTCTCATCCTCATTCCCATTTTCACCAAATTCCAGCTTTGCCCCTATCCAATTCCACCACCAACCATTTTGGTATAATTCAAGACCACCACAAGGCAGGCTCTTCATCCTCCTCTTCCATGATAACCTCACCATTCAGGAACCTCCACGTGTCGATGCAACCGACCTCGAATGCTGCCACGTCAGCTCACCTATCAGCCACAGCCCTACTCCAAAAGGCTGCAACAGTTGGAGTTGGGGCTGCAAAATCCGCTCACCATCAGCTCGAGTCAGTGGGCCACATGACTCACTTCAACATGCCCGGTGTCGCCGAGTTCGGCGCACCAACTCACATTGACTCGCTCACTCGTCAACTCGGTCCCGATTATGCCACGTGGCAAAAGAGTGATCGGTTGACTAGGGACTTCCTCGGTTTGACCGGAGATGGGAACGGCGGTGAAGGCGGTGGTTCCAGCGGTGGCCGTGGAGGGGTGCAGGTTAGCATGAGTGTTAAGGATATGCTAACGTACGCAGGGGGATTGGAGATGTTTAAGCCTCATCATCATCATAATAGTGCTTTTGGTTATACGGAGCCAGCTGCCAATGAAACTTGGGACTGCTGA | 1368 | 47.88 | MCVCFLRNEKLNRFEWDLYLVVDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPTCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANHLAMAAAATAATTINPSSVTAAQSLVSFGSHHQFSNLSLPLPPPPPSQTHMSLNPWDHPQNRNPNHTLQIIKPEDSHSHPHSHFHQIPALPLSNSTTNHFGIIQDHHKAGSSSSSSMITSPFRNLHVSMQPTSNAATSAHLSATALLQKAATVGVGAAKSAHHQLESVGHMTHFNMPGVAEFGAPTHIDSLTRQLGPDYATWQKSDRLTRDFLGLTGDGNGGEGGGSSGGRGGVQVSMSVKDMLTYAGGLEMFKPHHHHNSAFGYTEPAANETWDC | 455 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9141105 | 9145157 | + | Tan0005945.2 | Tan06g1022 | 755726 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g1022 | 455 | SMART | c2h2final6 | 118 | 138 | IPR013087 | - | |
Tan06g1022 | 455 | SMART | c2h2final6 | 83 | 113 | IPR013087 | - | |
Tan06g1022 | 455 | SMART | c2h2final6 | 42 | 64 | IPR013087 | - | |
Tan06g1022 | 455 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 44 | 64 | IPR013087 | - | |
Tan06g1022 | 455 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 117 | 141 | - | - | |
Tan06g1022 | 455 | Gene3D | Classic Zinc Finger | 111 | 176 | - | - | |
Tan06g1022 | 455 | Pfam | Zinc finger, C2H2 type | 42 | 64 | IPR013087 | - | |
Tan06g1022 | 455 | FunFam | protein indeterminate-domain 12-like | 21 | 89 | - | - | |
Tan06g1022 | 455 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 79 | 113 | - | - | |
Tan06g1022 | 455 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 399 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Tan06g1022 | 455 | SUPERFAMILY | beta-beta-alpha zinc fingers | 41 | 138 | IPR036236 | - | |
Tan06g1022 | 455 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 42 | 64 | IPR013087 | - | |
Tan06g1022 | 455 | MobiDBLite | consensus disorder prediction | 394 | 413 | - | - | |
Tan06g1022 | 455 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 96 | 175 | - | - | |
Tan06g1022 | 455 | Gene3D | Classic Zinc Finger | 23 | 90 | - | - | |
Tan06g1022 | 455 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 144 | 181 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g1022 | Tan-Chr6:9141105 | Tan08g1892 | Tan-Chr8:71233370 | 8.50E-81 | dispersed | |
Tan06g1021 | Tan-Chr6:9141105 | Tan06g1022 | Tan-Chr6:9141105 | 4.70E-242 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27732 | None | None | None | None | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g1022 | K25870 | - | csv:101208253 | 620.928 |