Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1057 ATGGAAGAGGTTGAAGAAGCTAACAGAGAAGCTGTGGAGAGTTGTCATAAAGTGTTGAATCTGTTGACTGTGGCGTCGCCTCAAGATCATCAGTCGAAGCTTAGGAGTTGTTTAATGGCGGAAACTGGAGAGGCTGTGTTTAAGTTTAGGAAGGTTTTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGGTTAAGAGTTCTTCCTCCCCCTTTTCTCTTCCCCAATCCATGTTCTTAGAAACTTCTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGGAGGAATTTGCAGATGGGTCCTCTTTCTTTGGGGAACCCATCTTTGGAATTGAGCTCTAATGGCAAAAGTTGTTCAATCCATCAACATCAACAACCTCAATCTGCTGCTGCTCATTATCATCATCATTTCCTTCAGAACAGGGTGTTGTTGAACAATAATCCTAATCCTAATCCTAATGCTCCACAGCCTGAAATGATGCATCTTAGGAGCAATAGTGGCATTAGCTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCTTTCATTTCTTCATTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGAGTGCCTTTCATTTGATTGGGGCGCCCCGGTCTTCCGATCAGAATTCGCACCATAAGAGGAAGTGCAGCGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCACTGGGAGATGTCACTGCTCAAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCTGCAATAAGTAATAAGCTTGCAGATATTCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCTCACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCAAGGAAGCACGTCGAGAGGTGTCTCGAGGAACCTTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCCAGAATACCTTCTCAATCTACAAATACTTGA 1032 44.57 MEEVEEANREAVESCHKVLNLLTVASPQDHQSKLRSCLMAETGEAVFKFRKVLCLLDSSGLGHARVRKKKVKSSSSPFSLPQSMFLETSSPNCRMDLLQGRNLQMGPLSLGNPSLELSSNGKSCSIHQHQQPQSAAAHYHHHFLQNRVLLNNNPNPNPNAPQPEMMHLRSNSGISLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSAFHLIGAPRSSDQNSHHKRKCSGRGEDGSVKCGSTGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQSTNT 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9693702 9696331 - Tan0008406.1 Tan06g1057 755761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1057 343 Gene3D WRKY domain 260 336 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g1057 343 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 340 IPR044810 GO:0003700(InterPro)
Tan06g1057 343 SMART WRKY_cls 275 335 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g1057 343 MobiDBLite consensus disorder prediction 222 236 - -
Tan06g1057 343 ProSiteProfiles WRKY domain profile. 270 336 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g1057 343 FunFam WRKY transcription factor 65 259 336 - -
Tan06g1057 343 MobiDBLite consensus disorder prediction 216 239 - -
Tan06g1057 343 Pfam Plant zinc cluster domain 228 273 IPR018872 -
Tan06g1057 343 SUPERFAMILY WRKY DNA-binding domain 273 335 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan06g1057 343 Pfam WRKY DNA -binding domain 277 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1057 Tan-Chr6:9693702 Tan07g2262 Tan-Chr7:74010122 3.50E-71 dispersed
Tan06g1057 Tan-Chr6:9693702 Tan06g1058 Tan-Chr6:9693702 2.60E-122 tandem
Tan06g1057 Tan-Chr6:9693702 Tan07g2261 Tan-Chr7:74010122 8.90E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27740 PF03106 WRKY 3.40E-26 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1057 - - - 0.0