Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1086 ATGTCAGTTGATAATGATCTGTTTGGCTACCAAGAAAATTTCTTGTGGAACAATAACGAGAGTTTTCCCGGGAAATTAGAGAATTCCCACCTCTCATTTGAGTTCAATTACTTGGAAGAGATGTTGCTTGCTGATATGCTTGATACCACAGCCGAAGGGACTTCGTCGTCGGATTCGAGCTCTTGCTCGTCTCCGATGATGCAAGTTAAGGAGGAGTTAGAGGAAGGGAGTTTGAGCGACGTCGTTGTACAAGAAGATCAACCACAGGAGGAAAGGGCGTATAGAGGGGTGCGGAGGAGGCCGTGGGGGAAGTACGCTGCCGAGATAAGGGACTCGACGCGACAAGGGGTGAGGGTTTGGTTGGGAACGTTTGAGAGTGCGGAGGCGGCTGCATTGGCTTATGACCAAGCTGCATTTTGTATGAGAGGGGCGCTAGCTACACTCAATTTTCCGGTGGAGGTTGTCCGAGAGTCGCTCCGAGAGATGAAGTACCGATGGGATGTCGGGTGCTCGCCGGTCTTGGCGCTCAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCGGAGGTGGAGAAGATGGAGAAGAAGATGAACAAGAAGAAGAAAACTGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA 672 49.55 MSVDNDLFGYQENFLWNNNESFPGKLENSHLSFEFNYLEEMLLADMLDTTAEGTSSSDSSSCSSPMMQVKEELEEGSLSDVVVQEDQPQEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFESAEAAALAYDQAAFCMRGALATLNFPVEVVRESLREMKYRWDVGCSPVLALKRRHSIRRKKMAEVEKMEKKMNKKKKTVVVFEDLGVEYLEELLSLTS 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10485883 10486584 + Tan0003933.1 Tan06g1086 755790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1086 223 Gene3D AP2/ERF domain 93 154 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1086 223 SMART rav1_2 93 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1086 223 SUPERFAMILY DNA-binding domain 93 153 IPR016177 GO:0003677(InterPro)
Tan06g1086 223 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1086 223 Coils Coil 183 203 - -
Tan06g1086 223 MobiDBLite consensus disorder prediction 50 67 - -
Tan06g1086 223 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1086 223 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1086 223 PANTHER DNA-BINDING DOMAIN 58 187 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Tan06g1086 223 CDD AP2 94 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1086 223 FunFam Ethylene-responsive transcription factor 2 92 153 - -
Tan06g1086 223 MobiDBLite consensus disorder prediction 50 69 - -
Tan06g1086 223 Pfam AP2 domain 94 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1086 Tan-Chr6:10485883 Tan07g2222 Tan-Chr7:73655817 9.10E-44 dispersed
Tan06g1085 Tan-Chr6:10418238 Tan06g1086 Tan-Chr6:10485883 7.90E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27743 PF00847 AP2 6.30E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1086 K14516 - csv:101205053 278.87