Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g1086 | ATGTCAGTTGATAATGATCTGTTTGGCTACCAAGAAAATTTCTTGTGGAACAATAACGAGAGTTTTCCCGGGAAATTAGAGAATTCCCACCTCTCATTTGAGTTCAATTACTTGGAAGAGATGTTGCTTGCTGATATGCTTGATACCACAGCCGAAGGGACTTCGTCGTCGGATTCGAGCTCTTGCTCGTCTCCGATGATGCAAGTTAAGGAGGAGTTAGAGGAAGGGAGTTTGAGCGACGTCGTTGTACAAGAAGATCAACCACAGGAGGAAAGGGCGTATAGAGGGGTGCGGAGGAGGCCGTGGGGGAAGTACGCTGCCGAGATAAGGGACTCGACGCGACAAGGGGTGAGGGTTTGGTTGGGAACGTTTGAGAGTGCGGAGGCGGCTGCATTGGCTTATGACCAAGCTGCATTTTGTATGAGAGGGGCGCTAGCTACACTCAATTTTCCGGTGGAGGTTGTCCGAGAGTCGCTCCGAGAGATGAAGTACCGATGGGATGTCGGGTGCTCGCCGGTCTTGGCGCTCAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCGGAGGTGGAGAAGATGGAGAAGAAGATGAACAAGAAGAAGAAAACTGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA | 672 | 49.55 | MSVDNDLFGYQENFLWNNNESFPGKLENSHLSFEFNYLEEMLLADMLDTTAEGTSSSDSSSCSSPMMQVKEELEEGSLSDVVVQEDQPQEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFESAEAAALAYDQAAFCMRGALATLNFPVEVVRESLREMKYRWDVGCSPVLALKRRHSIRRKKMAEVEKMEKKMNKKKKTVVVFEDLGVEYLEELLSLTS | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10485883 | 10486584 | + | Tan0003933.1 | Tan06g1086 | 755790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g1086 | 223 | Gene3D | AP2/ERF domain | 93 | 154 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan06g1086 | 223 | SMART | rav1_2 | 93 | 157 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan06g1086 | 223 | SUPERFAMILY | DNA-binding domain | 93 | 153 | IPR016177 | GO:0003677(InterPro) | |
Tan06g1086 | 223 | ProSiteProfiles | AP2/ERF domain profile. | 93 | 151 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan06g1086 | 223 | Coils | Coil | 183 | 203 | - | - | |
Tan06g1086 | 223 | MobiDBLite | consensus disorder prediction | 50 | 67 | - | - | |
Tan06g1086 | 223 | PRINTS | Ethylene responsive element binding protein signature | 117 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan06g1086 | 223 | PRINTS | Ethylene responsive element binding protein signature | 94 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan06g1086 | 223 | PANTHER | DNA-BINDING DOMAIN | 58 | 187 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Tan06g1086 | 223 | CDD | AP2 | 94 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan06g1086 | 223 | FunFam | Ethylene-responsive transcription factor 2 | 92 | 153 | - | - | |
Tan06g1086 | 223 | MobiDBLite | consensus disorder prediction | 50 | 69 | - | - | |
Tan06g1086 | 223 | Pfam | AP2 domain | 94 | 143 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g1086 | Tan-Chr6:10485883 | Tan07g2222 | Tan-Chr7:73655817 | 9.10E-44 | dispersed | |
Tan06g1085 | Tan-Chr6:10418238 | Tan06g1086 | Tan-Chr6:10485883 | 7.90E-20 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27743 | PF00847 | AP2 | 6.30E-14 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g1086 | K14516 | - | csv:101205053 | 278.87 |