Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1106 ATGGGAACAGCCACTGTACAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTGGTTTCATGCCACACCACAAAGCCTTTGCCTCTTCCTAAGAACTGCAGAAATCTCGCTGTTGTCTTAAAACTTCTGAAACTCGTGCTTGATGATGTCATTAGCCTAAAACTGTCTTCAGATGAGTTACTTTATAGAGAATGCGAATCACTGGATATCGCTGTTAACGAGGCTCGGGAGTTCGTTGAAAACTGGTGTCCGAAGATGAGCAAAATTTGCAGCGCTTTGAAATGTGATCCGCTGCTTATAAAAATTCAAAGCTCTTCGCAAGAGATTTGTGATATTGTATGGAAGTTGTCGGAATCGGTATCATGTAGTTCAAGTCTAAATGCTGTTCAGAAATGTCTTGAAGGCCTTCAATCTTTGGAGCAAGAAAGGATATCTGAATCTATAGAAGAGGCTCTAATTAGTCAAAGAAGTGGCGTTGGCCCAAACTCTGAACATCTTCTAAAAATTATTGAAGCGCTTCATTTGATGTCAAATCAAGAACTTCTGAAGGAGACTATAGCTGTCGAAAAGGAGAGAATCAATGCTGAACGCAACAATGCGAAGGAGGAACTATATCACATCAACCAAATTATGGATCTAATTATCCGTATACGAGATTGGATGGTTAGAAAGGACTACTTTCATGGGATAAATGGAGTTTCAATTCCTTCGTACTTCCGCTGCCCATTGTCGTTGGAGCTGATGCTTGATCCAGTAATTGTGGCATCTGGCCAAACTTATGACAGGTCCTCCATTCAAAAGTGGATTGATGGTGGACTGAACATTTGCCCCAACACTCATCAGACGCTCACACATACAAATCTCATTCCCAATTACACTGTTAAAGCCATGATATTGAATTGGTGCGATGAAAACAAATTGAATATTTCCAGTTTATCATCGTTGGTTCAATTGTCTCAGCAGGATTTGAATCGAAGTGATAGCTTTCATTATTCTTTACATGGCAGTAATTCAACTGCAAGATCATCTCCTGAAGTTGAAAAGGGTTCTGACAAGCGAAATGAGGACGTTTTTACTAGTTTAATTGGGGAAAAATCTAATGAGGGTCGGAGGAATGAAACCGAAAAGTTTGACCACCCTTCCCCTCAGCAGTCGTATATCTACAGTAGGAGTGTATCAGCCTCCAGTGCCTTCTCTAGCATTGATTATGTTCCATCGGCACTTAATGAGTTGTTGAAGATATCAACTAAACACGAATATATAAAGGAATTATCTGGAGAAATCACATCAGAACATCCTGCTGTATCTCATACTGAAGGTTCTGAATTGACTTCATCATTAGGAGGTGGACAATTACAGCTTTGTAAAACAGAAGCAGATATGGTGGAGAATGGAAACTGTAATGGTACAACAGATAACTCAACCCCAGTTGAACCTGAATCTGATAACTCGTCCGGAGATTTGCATATCAAGAAATTAATTGCAGACCTAAAGAGCCAAAGGGATGAAGTTCAAATGCAAGCTGCAGAAGAATTAAGGCTTCTTGCCAAGGATAACGTAGAGAACCGTATTATAATAGGCCAGTGTGGGGCTATAGGGTCCTTACTTTCGCTGTTATATTCAGACGGAAAGCTGATACAGGAGCATGCCGTGACAGCTCTCTTAAACCTATCGATTAATGAAAACAATAAAGCTATGATTGCACAGGCAGGAGCTATAGAACCACTTATTCATGTTTTGATGACAGGAACCTCTACTGCTAAAGAAAACTCTGCAGCAACTTTATTCAGTCTCTCTGTATTAGAAGAATACAAGGCTAAAATTGGTCGGTCCGGCGCAGTTAAAGCCTTGGTGGATCTCTTAGGTGTGGGTACTCTGAGGGGCAAGAAAGATGCAGCTACAGCTTTGTTCAACTTATCAATTTTTCATGAAAATAAGGCTCGTATAGTTCAAGCAGGAGCAGTTAAGTATCTTGTTGGGCTACTAGACACTGCTACAGGTATGGTTGACAAGGCTGCTGCACTTCTTGCTAATTTATCAACAATTTCAGAGGGACGATTGGCAATTGCTCGGGAAGGGGGTATACCCTTGTTGGTAGAAATTGTTGAATGTGGATCTATGAGAGGAAAGGAAAATGCTGCATCTGTTCTGTTGCAACTATGCCTTCATAGTTCCAAGTTTTGTACCCTGGTTCTCCAAGAAGGGGCTGTTCCGCCTCTTGTTGCCTTATCTCAGTCTGGCACACCTAGAGCAAAAGAAAAGGCACAACAGCTGCTCAGCCATTTTCGGAATCAAAGAGATGGAACCACAGGGAAAGAAAAATCATAG 2331 40.97 MGTATVQCLINSISRFIHLVSCHTTKPLPLPKNCRNLAVVLKLLKLVLDDVISLKLSSDELLYRECESLDIAVNEAREFVENWCPKMSKICSALKCDPLLIKIQSSSQEICDIVWKLSESVSCSSSLNAVQKCLEGLQSLEQERISESIEEALISQRSGVGPNSEHLLKIIEALHLMSNQELLKETIAVEKERINAERNNAKEELYHINQIMDLIIRIRDWMVRKDYFHGINGVSIPSYFRCPLSLELMLDPVIVASGQTYDRSSIQKWIDGGLNICPNTHQTLTHTNLIPNYTVKAMILNWCDENKLNISSLSSLVQLSQQDLNRSDSFHYSLHGSNSTARSSPEVEKGSDKRNEDVFTSLIGEKSNEGRRNETEKFDHPSPQQSYIYSRSVSASSAFSSIDYVPSALNELLKISTKHEYIKELSGEITSEHPAVSHTEGSELTSSLGGGQLQLCKTEADMVENGNCNGTTDNSTPVEPESDNSSGDLHIKKLIADLKSQRDEVQMQAAEELRLLAKDNVENRIIIGQCGAIGSLLSLLYSDGKLIQEHAVTALLNLSINENNKAMIAQAGAIEPLIHVLMTGTSTAKENSAATLFSLSVLEEYKAKIGRSGAVKALVDLLGVGTLRGKKDAATALFNLSIFHENKARIVQAGAVKYLVGLLDTATGMVDKAAALLANLSTISEGRLAIAREGGIPLLVEIVECGSMRGKENAASVLLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQRDGTTGKEKS 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10859956 10866080 + Tan0016419.2 Tan06g1106 755810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1106 776 SUPERFAMILY RING/U-box 233 308 - -
Tan06g1106 776 SMART arm_5 602 642 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 SMART arm_5 561 601 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 SMART arm_5 683 723 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 SMART arm_5 520 560 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 SMART arm_5 643 682 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 Pfam Armadillo/beta-catenin-like repeat 561 600 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 Pfam Armadillo/beta-catenin-like repeat 604 641 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 Pfam Armadillo/beta-catenin-like repeat 520 559 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 613 655 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 MobiDBLite consensus disorder prediction 466 486 - -
Tan06g1106 776 FunFam RING-type E3 ubiquitin transferase 475 769 - -
Tan06g1106 776 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan06g1106 776 PANTHER U BOX DOMAIN-CONTAINING 31 767 - -
Tan06g1106 776 MobiDBLite consensus disorder prediction 757 776 - -
Tan06g1106 776 MobiDBLite consensus disorder prediction 334 385 - -
Tan06g1106 776 MobiDBLite consensus disorder prediction 346 360 - -
Tan06g1106 776 Pfam U-box domain 236 307 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan06g1106 776 Coils Coil 491 515 - -
Tan06g1106 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 654 695 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 MobiDBLite consensus disorder prediction 752 776 - -
Tan06g1106 776 MobiDBLite consensus disorder prediction 466 483 - -
Tan06g1106 776 Coils Coil 179 204 - -
Tan06g1106 776 CDD RING-Ubox_PUB 237 289 IPR045210 -
Tan06g1106 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Tan06g1106 776 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan06g1106 776 Gene3D - 481 628 IPR011989 -
Tan06g1106 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 531 573 IPR000225 GO:0005515(InterPro)
Tan06g1106 776 FunFam RING-type E3 ubiquitin transferase 236 307 - -
Tan06g1106 776 SUPERFAMILY ARM repeat 491 763 IPR016024 -
Tan06g1106 776 Gene3D - 629 768 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1106 Tan-Chr6:10859956 Tan11g0293 Tan-Chr11:2314913 4.30E-24 dispersed
Tan06g1105 Tan-Chr6:10859956 Tan06g1106 Tan-Chr6:10859956 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1106 - - - 0.0