Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g1106 | ATGGGAACAGCCACTGTACAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTGGTTTCATGCCACACCACAAAGCCTTTGCCTCTTCCTAAGAACTGCAGAAATCTCGCTGTTGTCTTAAAACTTCTGAAACTCGTGCTTGATGATGTCATTAGCCTAAAACTGTCTTCAGATGAGTTACTTTATAGAGAATGCGAATCACTGGATATCGCTGTTAACGAGGCTCGGGAGTTCGTTGAAAACTGGTGTCCGAAGATGAGCAAAATTTGCAGCGCTTTGAAATGTGATCCGCTGCTTATAAAAATTCAAAGCTCTTCGCAAGAGATTTGTGATATTGTATGGAAGTTGTCGGAATCGGTATCATGTAGTTCAAGTCTAAATGCTGTTCAGAAATGTCTTGAAGGCCTTCAATCTTTGGAGCAAGAAAGGATATCTGAATCTATAGAAGAGGCTCTAATTAGTCAAAGAAGTGGCGTTGGCCCAAACTCTGAACATCTTCTAAAAATTATTGAAGCGCTTCATTTGATGTCAAATCAAGAACTTCTGAAGGAGACTATAGCTGTCGAAAAGGAGAGAATCAATGCTGAACGCAACAATGCGAAGGAGGAACTATATCACATCAACCAAATTATGGATCTAATTATCCGTATACGAGATTGGATGGTTAGAAAGGACTACTTTCATGGGATAAATGGAGTTTCAATTCCTTCGTACTTCCGCTGCCCATTGTCGTTGGAGCTGATGCTTGATCCAGTAATTGTGGCATCTGGCCAAACTTATGACAGGTCCTCCATTCAAAAGTGGATTGATGGTGGACTGAACATTTGCCCCAACACTCATCAGACGCTCACACATACAAATCTCATTCCCAATTACACTGTTAAAGCCATGATATTGAATTGGTGCGATGAAAACAAATTGAATATTTCCAGTTTATCATCGTTGGTTCAATTGTCTCAGCAGGATTTGAATCGAAGTGATAGCTTTCATTATTCTTTACATGGCAGTAATTCAACTGCAAGATCATCTCCTGAAGTTGAAAAGGGTTCTGACAAGCGAAATGAGGACGTTTTTACTAGTTTAATTGGGGAAAAATCTAATGAGGGTCGGAGGAATGAAACCGAAAAGTTTGACCACCCTTCCCCTCAGCAGTCGTATATCTACAGTAGGAGTGTATCAGCCTCCAGTGCCTTCTCTAGCATTGATTATGTTCCATCGGCACTTAATGAGTTGTTGAAGATATCAACTAAACACGAATATATAAAGGAATTATCTGGAGAAATCACATCAGAACATCCTGCTGTATCTCATACTGAAGGTTCTGAATTGACTTCATCATTAGGAGGTGGACAATTACAGCTTTGTAAAACAGAAGCAGATATGGTGGAGAATGGAAACTGTAATGGTACAACAGATAACTCAACCCCAGTTGAACCTGAATCTGATAACTCGTCCGGAGATTTGCATATCAAGAAATTAATTGCAGACCTAAAGAGCCAAAGGGATGAAGTTCAAATGCAAGCTGCAGAAGAATTAAGGCTTCTTGCCAAGGATAACGTAGAGAACCGTATTATAATAGGCCAGTGTGGGGCTATAGGGTCCTTACTTTCGCTGTTATATTCAGACGGAAAGCTGATACAGGAGCATGCCGTGACAGCTCTCTTAAACCTATCGATTAATGAAAACAATAAAGCTATGATTGCACAGGCAGGAGCTATAGAACCACTTATTCATGTTTTGATGACAGGAACCTCTACTGCTAAAGAAAACTCTGCAGCAACTTTATTCAGTCTCTCTGTATTAGAAGAATACAAGGCTAAAATTGGTCGGTCCGGCGCAGTTAAAGCCTTGGTGGATCTCTTAGGTGTGGGTACTCTGAGGGGCAAGAAAGATGCAGCTACAGCTTTGTTCAACTTATCAATTTTTCATGAAAATAAGGCTCGTATAGTTCAAGCAGGAGCAGTTAAGTATCTTGTTGGGCTACTAGACACTGCTACAGGTATGGTTGACAAGGCTGCTGCACTTCTTGCTAATTTATCAACAATTTCAGAGGGACGATTGGCAATTGCTCGGGAAGGGGGTATACCCTTGTTGGTAGAAATTGTTGAATGTGGATCTATGAGAGGAAAGGAAAATGCTGCATCTGTTCTGTTGCAACTATGCCTTCATAGTTCCAAGTTTTGTACCCTGGTTCTCCAAGAAGGGGCTGTTCCGCCTCTTGTTGCCTTATCTCAGTCTGGCACACCTAGAGCAAAAGAAAAGGCACAACAGCTGCTCAGCCATTTTCGGAATCAAAGAGATGGAACCACAGGGAAAGAAAAATCATAG | 2331 | 40.97 | MGTATVQCLINSISRFIHLVSCHTTKPLPLPKNCRNLAVVLKLLKLVLDDVISLKLSSDELLYRECESLDIAVNEAREFVENWCPKMSKICSALKCDPLLIKIQSSSQEICDIVWKLSESVSCSSSLNAVQKCLEGLQSLEQERISESIEEALISQRSGVGPNSEHLLKIIEALHLMSNQELLKETIAVEKERINAERNNAKEELYHINQIMDLIIRIRDWMVRKDYFHGINGVSIPSYFRCPLSLELMLDPVIVASGQTYDRSSIQKWIDGGLNICPNTHQTLTHTNLIPNYTVKAMILNWCDENKLNISSLSSLVQLSQQDLNRSDSFHYSLHGSNSTARSSPEVEKGSDKRNEDVFTSLIGEKSNEGRRNETEKFDHPSPQQSYIYSRSVSASSAFSSIDYVPSALNELLKISTKHEYIKELSGEITSEHPAVSHTEGSELTSSLGGGQLQLCKTEADMVENGNCNGTTDNSTPVEPESDNSSGDLHIKKLIADLKSQRDEVQMQAAEELRLLAKDNVENRIIIGQCGAIGSLLSLLYSDGKLIQEHAVTALLNLSINENNKAMIAQAGAIEPLIHVLMTGTSTAKENSAATLFSLSVLEEYKAKIGRSGAVKALVDLLGVGTLRGKKDAATALFNLSIFHENKARIVQAGAVKYLVGLLDTATGMVDKAAALLANLSTISEGRLAIAREGGIPLLVEIVECGSMRGKENAASVLLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQRDGTTGKEKS | 776 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10859956 | 10866080 | + | Tan0016419.2 | Tan06g1106 | 755810 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g1106 | 776 | SUPERFAMILY | RING/U-box | 233 | 308 | - | - | |
Tan06g1106 | 776 | SMART | arm_5 | 602 | 642 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | SMART | arm_5 | 561 | 601 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | SMART | arm_5 | 683 | 723 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | SMART | arm_5 | 520 | 560 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | SMART | arm_5 | 643 | 682 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | Pfam | Armadillo/beta-catenin-like repeat | 561 | 600 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | Pfam | Armadillo/beta-catenin-like repeat | 604 | 641 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | Pfam | Armadillo/beta-catenin-like repeat | 520 | 559 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 613 | 655 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | MobiDBLite | consensus disorder prediction | 466 | 486 | - | - | |
Tan06g1106 | 776 | FunFam | RING-type E3 ubiquitin transferase | 475 | 769 | - | - | |
Tan06g1106 | 776 | SMART | Ubox_2 | 239 | 302 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan06g1106 | 776 | PANTHER | U BOX DOMAIN-CONTAINING | 31 | 767 | - | - | |
Tan06g1106 | 776 | MobiDBLite | consensus disorder prediction | 757 | 776 | - | - | |
Tan06g1106 | 776 | MobiDBLite | consensus disorder prediction | 334 | 385 | - | - | |
Tan06g1106 | 776 | MobiDBLite | consensus disorder prediction | 346 | 360 | - | - | |
Tan06g1106 | 776 | Pfam | U-box domain | 236 | 307 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan06g1106 | 776 | Coils | Coil | 491 | 515 | - | - | |
Tan06g1106 | 776 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 654 | 695 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | MobiDBLite | consensus disorder prediction | 752 | 776 | - | - | |
Tan06g1106 | 776 | MobiDBLite | consensus disorder prediction | 466 | 483 | - | - | |
Tan06g1106 | 776 | Coils | Coil | 179 | 204 | - | - | |
Tan06g1106 | 776 | CDD | RING-Ubox_PUB | 237 | 289 | IPR045210 | - | |
Tan06g1106 | 776 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 310 | IPR013083 | - | |
Tan06g1106 | 776 | ProSiteProfiles | U-box domain profile. | 235 | 309 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan06g1106 | 776 | Gene3D | - | 481 | 628 | IPR011989 | - | |
Tan06g1106 | 776 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 531 | 573 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1106 | 776 | FunFam | RING-type E3 ubiquitin transferase | 236 | 307 | - | - | |
Tan06g1106 | 776 | SUPERFAMILY | ARM repeat | 491 | 763 | IPR016024 | - | |
Tan06g1106 | 776 | Gene3D | - | 629 | 768 | IPR011989 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g1106 | Tan-Chr6:10859956 | Tan11g0293 | Tan-Chr11:2314913 | 4.30E-24 | dispersed | |
Tan06g1105 | Tan-Chr6:10859956 | Tan06g1106 | Tan-Chr6:10859956 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g1106 | - | - | - | 0.0 |