Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1127 ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGTTGAGGGGTTCTACGAAGAAGAAGGATAATAGTATGGGAGAGAATCCTGAGGATTCTACTGATCAAACGGATGAAGAAGCGCTTTCTAATATCACTAAGCAGAAGGTTGCTGCGGCAAAGCAGTATATCGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAAGACAGAAAGGAAAGACGAAATGTATTGGAAAGGAAGTTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAGTTTTTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGGCACAAAATGGGCGTCGATGATTTTGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGTAATTGCATCGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTTTACCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGAAGATGAAGCAAGGTTTTATGTTGGAGAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCAGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAGCCATTAGATTGCAGTATTCTCCAAGAACAAGATTTTGATGTAGGGAATGTTCGTAATGGAGCTGGACAAACTGATGAGCGCAATGCAGCTCCTACACGTACTCAACAAGAGCAACTGCAACATTGGCAGAAGAATCGCAGAATGCTTGCTTATTCAACAGTTGGAACCCCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTACGGAATGGAATGTGACTGGTGGTCACTTGGAGCAATTATGTATGAAATGCTTGTTGGCTACCCACCGTTTTACTCTGATGATCCAATGTCGACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGAAGTTTCCTGACGAGGCAAAGCTATCTCCCTTGGCAAAAGATCTCATCAGCAAACTACTATGCAATGTTAACCAGAGGCTAGGTACAAATGGCCCGGATGAAATTAAGGTTCATCCGTGGTTTGAATGTACTGAATGGGATAAGCTATACGAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTCGAAGAGTCTGATTCGCAAAGCAGTACATCATCTAAAACTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTACAAGAACTTCGAAATTGTCAACGATTATCAATTGCCTGGGATGGCTGAATTGAAGAAAAAATGCAGCAAACCAAAAAGACCCTCAATCAAGTCACTCTTTGAGGGCGAGTCGGAGGCATCAGATGCCTCTGATATATCTGATCCTCAGCCCACTGGAGGCAGCTTTTCGAACTCAATGACATCTCAACTGGATGTACTTGAAGAGACGAAAGAGTCGATGTAA 1671 40.87 MDSARSWFNKLQPRDRLRGSTKKKDNSMGENPEDSTDQTDEEALSNITKQKVAAAKQYIENHYKEQMKNLQDRKERRNVLERKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSILQEQDFDVGNVRNGAGQTDERNAAPTRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSPLAKDLISKLLCNVNQRLGTNGPDEIKVHPWFECTEWDKLYEMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKTGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKCSKPKRPSIKSLFEGESEASDASDISDPQPTGGSFSNSMTSQLDVLEETKESM 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11113320 11123682 + Tan0020471.1 Tan06g1127 755831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1127 556 ProSiteProfiles Protein kinase domain profile. 121 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1127 556 CDD MobB_NDR_LATS-like 55 116 - -
Tan06g1127 556 Gene3D Transferase(Phosphotransferase) domain 1 319 438 - -
Tan06g1127 556 Gene3D Transferase(Phosphotransferase) domain 1 205 270 - -
Tan06g1127 556 Coils Coil 63 83 - -
Tan06g1127 556 FunFam Non-specific serine/threonine protein kinase 319 438 - -
Tan06g1127 556 SUPERFAMILY Protein kinase-like (PK-like) 94 473 IPR011009 -
Tan06g1127 556 Gene3D Phosphorylase Kinase; domain 1 439 449 - -
Tan06g1127 556 Gene3D Phosphorylase Kinase; domain 1 119 204 - -
Tan06g1127 556 SMART pkinase_C_6 421 485 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1127 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g1127 556 MobiDBLite consensus disorder prediction 525 550 - -
Tan06g1127 556 ProSiteProfiles AGC-kinase C-terminal domain profile. 421 493 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1127 556 SMART serkin_6 121 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1127 556 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524(InterPro)
Tan06g1127 556 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 488 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Tan06g1127 556 MobiDBLite consensus disorder prediction 1 43 - -
Tan06g1127 556 MobiDBLite consensus disorder prediction 503 556 - -
Tan06g1127 556 FunFam Non-specific serine/threonine protein kinase 92 204 - -
Tan06g1127 556 CDD STKc_NDR_like 119 484 - -
Tan06g1127 556 Pfam Protein kinase domain 317 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1127 556 Pfam Protein kinase domain 123 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1127 556 FunFam Non-specific serine/threonine protein kinase 205 272 - -
Tan06g1127 556 Pfam Protein kinase C terminal domain 439 483 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1127 556 MobiDBLite consensus disorder prediction 9 31 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1127 Tan-Chr6:11113320 Tan06g2405 Tan-Chr6:76338891 2.10E-246 dispersed
Tan06g1127 Tan-Chr6:11113320 Tan06g1128 Tan-Chr6:11113320 2.40E-303 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67770 PF00069 Pkinase 5.90E-63 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1127 K08790 - csv:101221720 1014.22