Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1134 ATGGCAGCCTCTGCTTCTTCTTCTTCTTCCTCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTACTTCCGCCACGAACTCGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTCGGTGCGAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCCCACCGCTACGAAGCGGCGGTGACGATCTCCTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTATGGTTGTGTCTCACATATTTTCACTCTCCAACATCAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCCTTCTCAACAGCTACATTACTAGAAACCCTAGTGAATTACTGTACGAAAAATCTCCATTTAATTCCGACGAGCTGCAATTACAGGATCTTCAAAGTTGGCTTCTGACGGACAGCTGCAGCGCCGCCGAACCGGAGTTTGAACCTGCGGCGGCTGTGCCGTACGTTGAGATGAGCATCGCCGATTCAAATCTCGCCGGAGATTTCTGCTGCTAA 561 49.91 MAASASSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRYEAAVTISYEAQARLQDPIYGCVSHIFTLQHQVMNLRAQVAYLREQAAQILLNSYITRNPSELLYEKSPFNSDELQLQDLQSWLLTDSCSAAEPEFEPAAAVPYVEMSIADSNLAGDFCC 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11283057 11284135 + Tan0007248.1 Tan06g1134 755838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1134 186 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Tan06g1134 186 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Tan06g1134 186 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 127 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0267 Tan-Chr4:2119646 Tan06g1134 Tan-Chr6:11283057 1.50E-37 dispersed
Tan06g1134 Tan-Chr6:11283057 Tan07g2229 Tan-Chr7:73735870 5.40E-42 dispersed
Tan06g1134 Tan-Chr6:11283057 Tan06g2154 Tan-Chr6:71327896 2.50E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27750 PF03195 LOB 1.10E-34 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1134 K13945 - csv:101220863 292.737