Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1208 ATGTCTCGAACACCGAATTATGAGTTCCAAGAATGGTGGAACAAACAGAGAGAAAAGAACCATGACGAACTCTTACTGGAAAAGTCCGACAACTTCTCAACCTCTCCTGCATTTCTCTCCGTTGAGATCCGGAGTTCAGGGAGCCATGGAGATCGGACGGCCGATAAGGACCGGGCGAGGACCAGGAGTGCCCGTCAGATTTCTTGGGTTTGGCTGTTGAGATTCCAGCAGATTGCTGGTTCTTTGGCTTCAATCACCAATGGCGTCCTTTATCTAATCCGCACTGCCAATCGTCGGATCGCATCGCCGGATTCTCCAGCTGATTCGGCCTCGTCTCGGCTCTACAGGATTATCAAAGTATTTTTGATTGTAGTGCTTCTGTTGCTCCTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAGCCCCCCTTCTGTGAGTTCCGCTTCTGCGGAGGTGCTTGGAATGATAGGCTTTCTCTATGCTAATTGGCTTGAGATTCGGGCAAATTACTTGGCTCCACCTCTGCAGAGTTTGATCAATATGTGCATTGTGTTGTTCCTGATCCAGTCAGTGGATCGTTTGGTTTTAATGCTGGGGTGTTTTTGGATCAAGTTCCGGGGATTGAAGCCCGTGGCCACGTTTGAATACTCGGCCACTGATGAGAATGCTGCTAGTCCTGAGGATTATCCAATGGTGTTGGTGCAGATCCCCATGTGCAATGAGAGGGAGGTTTATCAACAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCGAAGGATAAAATGCTTGTACAAGTTTTAGATGATTCTGATGAGCTAGATGCTCAACAACTTATCAAGGCTGAAGTACAAAAATGGCAACAGAGAGGTGTCCGCATATTGTATAGACACCGCCTCATACGTACAGGCTACAAGGCAGGGAATCTCAAATCTGCTATGGGGTGCGATTATGTAAAAGATTACGAGTTTGTAGCAATCTTTGATGCAGATTTTCAGCCAGGACCAGACTTTTTAAAGAAAACTATTCCACATTTCAAGGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCATTTGTGAACAAGGACGAAAACTTGCTTACAAGATTGCAGAACATAAATTTATCCTTCCATTTTGAGGTTGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGTGGGGGCTGGTTAGAAAGAACAACTGTTGAGGACATGGATATTGCAGTTCGTGCCCATCTTTGTGGCTGGAAGTTCATATATCTAAATGATGTGAAGTGCCTTTGTGAACTTCCAGAATCATATGAAGCGTACAAGAAACAACAACACCGCTGGCATTCAGGCCCAATGCAGTTATTTCGTATGTGCTTCTCTGATATACTCAAATCAAAGGTGAGTTGGAAGAAGAAAGCTAATTTGATTTTTCTTTTCTTCCTCTTGCGAAAGCTCGTCCTTCCCTTTTATTCCTTTACCTTGTTCTGCATAATTCTTCCCCTGACCATGTTCCTTCCAGAAGCTCATCTACCGGCTTGGGTTGTTTGCTATGTTCCCGGAATCATGTCCGTCTTAAATATTCTCCCTGCACCGCAGGCGTTTCCTTTTATAGTCCCCTATCTTCTATTTGAAAACACCATGTCTGTTACCAAATTCAATGCCATGATATTGGGGTTGTTCCGCTTTAGAAGTTCGTATGAATGGATAGTAACGAAAAAACTAGGAAGATCATCTGAAAACGATCTTGTTGCTTTCGAAAAAGAACTAGAACCTCTAGTTGAAAGTACAAGTCTTCATCGATCCTCCTCGGAATCAGGTCTTCAGGAACTGACCAAGCTCGAGATATCGAAAAAAGCAGGGAAAAGCAAAAGAAATCGTCTGTACAGGAAGGAATTGGCTCTTGCATTCATTTTGTTAACCGCCTCGGTGAGAAGTTTGTTATCTGCGCAAGGAATTCACTTCTACTTCCTATTATTTCAAGGTATCACTTTTCTAGTAGTTGGTCTTGATTTAATCGGAGAGCAGGTCAGTTAA 2085 43.6 MSRTPNYEFQEWWNKQREKNHDELLLEKSDNFSTSPAFLSVEIRSSGSHGDRTADKDRARTRSARQISWVWLLRFQQIAGSLASITNGVLYLIRTANRRIASPDSPADSASSRLYRIIKVFLIVVLLLLLFELVAYFNGWHFSPPSVSSASAEVLGMIGFLYANWLEIRANYLAPPLQSLINMCIVLFLIQSVDRLVLMLGCFWIKFRGLKPVATFEYSATDENAASPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLVQVLDDSDELDAQQLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRMCFSDILKSKVSWKKKANLIFLFFLLRKLVLPFYSFTLFCIILPLTMFLPEAHLPAWVVCYVPGIMSVLNILPAPQAFPFIVPYLLFENTMSVTKFNAMILGLFRFRSSYEWIVTKKLGRSSENDLVAFEKELEPLVESTSLHRSSSESGLQELTKLEISKKAGKSKRNRLYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQVS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12558067 12575528 - Tan0003357.1 Tan06g1208 755912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1208 694 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 450 IPR029044 -
Tan06g1208 694 FunFam probable xyloglucan glycosyltransferase 5 224 450 - -
Tan06g1208 694 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 510 IPR029044 -
Tan06g1208 694 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 159 693 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Tan06g1208 694 Pfam Glycosyl transferase family group 2 326 528 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1208 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1687 Tan-Chr2:79305421 Tan06g1208 Tan-Chr6:12558067 4.60E-243 dispersed
Tan06g1208 Tan-Chr6:12558067 Tan11g0591 Tan-Chr11:5279211 6.60E-234 dispersed
Tan06g1208 Tan-Chr6:12558067 Tan01g4659 Tan-Chr1:112546602 5.00E-242 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g1371 . 220 380 REM Transcription Factor Family AT1G49480 71.4 7.3e-57 218.0
Tan01g3747 . 1 682 REM Transcription Factor Family AT2G24630 76.0 2.5e-310 1061.6
Tan01g3749 . 1 643 REM Transcription Factor Family AT2G24630 70.2 6.3e-277 950.7
Tan11g0591 . 6 666 REM Transcription Factor Family AT2G24630 69.0 5.0e-266 914.4
Tan01g4659 . 1 706 REM Transcription Factor Family AT2G24630 64.2 1.8e-263 906.0
Tan02g1687 . 5 700 REM Transcription Factor Family AT2G24630 65.3 1.9e-257 885.9
Tan06g1208 . 5 694 REM Transcription Factor Family AT2G24630 61.7 9.1e-244 840.5
Tan11g0963 . 74 304 REM Transcription Factor Family AT2G24630 50.2 6.7e-61 233.0
Tan01g3747 . 1 682 REM Transcription Factor Family AT2G24630 76.0 2.5e-310 1061.6
Tan01g3749 . 1 643 REM Transcription Factor Family AT2G24630 70.2 6.3e-277 950.7
Tan11g0591 . 6 666 REM Transcription Factor Family AT2G24630 69.0 5.0e-266 914.4
Tan01g4659 . 1 706 REM Transcription Factor Family AT2G24630 64.2 1.8e-263 906.0
Tan02g1687 . 5 700 REM Transcription Factor Family AT2G24630 65.3 1.9e-257 885.9
Tan06g1208 . 5 694 REM Transcription Factor Family AT2G24630 61.7 9.1e-244 840.5
Tan11g0963 . 74 304 REM Transcription Factor Family AT2G24630 50.2 6.7e-61 233.0
Tan01g3747 . 1 682 REM Transcription Factor Family AT2G24630 76.0 2.5e-310 1061.6
Tan01g3749 . 1 643 REM Transcription Factor Family AT2G24630 70.2 6.3e-277 950.7
Tan11g0591 . 6 666 REM Transcription Factor Family AT2G24630 69.0 5.0e-266 914.4
Tan01g4659 . 1 706 REM Transcription Factor Family AT2G24630 64.2 1.8e-263 906.0
Tan02g1687 . 5 700 REM Transcription Factor Family AT2G24630 65.3 1.9e-257 885.9
Tan06g1208 . 5 694 REM Transcription Factor Family AT2G24630 61.7 9.1e-244 840.5
Tan11g0963 . 74 304 REM Transcription Factor Family AT2G24630 50.2 6.7e-61 233.0
Tan05g1371 . 220 380 REM Transcription Factor Family AT1G49480 71.4 7.3e-57 218.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36