Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1211 ATGGAGAACGAATTCTTCCTCAATGCTACTGGAATCTCTCCATCTCTTATGCATTTCGACTCCAATCCTTCTATGCCGACCTGGCACCACCAGTTTTCGTCCGCCATGGTCATGGATCTTCAATCTCAATCTCAACCTCAGCTTCATCTTCATCTTCCTGAGCTTAATAATCACTCTTCCTCCTCTCACCAATCGCCACCACCGGATTGCTTTCTCAATCCGGTTCCCGATCAGGGCTTCCAATTCGATTCGGCTCTGAGTTCGATGGTTTCTTCTCCCGCTGCGTCCAATTCTAACCTAACCAACGACGGCTTCGTGATCAGGGAACTGATCGGGAAATTAGCTGTGAATTCCGAGAGGAGAATCTTGGAATTGAATTCTTCCTCTTCGAATGTGCCGGAATTTTCGTCCGATCCTGGATTTGCAGAGCGGGCTGCTAGGTTTTCGTGTTTTGGTAGTAGGAGCTTCAATGGCCGTCAATTGACGAACGAATTCGCTAATTACAGATCTCCCCTCTCGATCGCGAACGAGAAATTGAGCCGAGTTTCGAGCAGTCCGTCGCTCAAGGCCCTCGGATCTGAAACCAATTTGCAGGAACACAAGAACCATTCCTCATCGCAAGAAGACGAATCGTCTCTCTCGAATCCAGACAAGGCGATTTCGAATCCACGGAAGAGAAAGGCAATTACGAAGGCCAAACTCAAAGAACCGGTGATCGAAGCTCCCGAAAAGGGAAGTCCGAAGAAAATCAAGGCAGTGGAAACGAAGGAAAACGAAAAAGGGAACGTGAAAACAGAGGAGGATTCGAAGAAAACCGATGCAAATTTAGCGGAAGAGAAGCAAACGAACGCGAATTCAAAGCCTCCTGAACCCCCAAAAGACTACATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGCCTCGCTGAAAGAGTTAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTAACTGGAAAAGCTCTAATGCTGGATGAGATTATCAACTATGTTCAGTCATTACAACACCAAGTTGAGTTTCTGTCCATGAAGTTGGCATCTGTGAATACAACCAGGGTGGATTTCAACATGGATTCTCTTATCTCAAAACAAATGTACCAATCAGGTACCAGTTTGCCACATCCTCAAATTTCCCCTATAGATTCCTCAGCTTCAAGCTTTTATGGGCAGCACCAAAATCCCTCTCTCCCAACTACCTCTCATTGCTCTGTGGACCCTCTTGACTCTGTTTTATGCCAAAATCTTCCAATTCAACTCCCTCCTCTCAATTCCTTCCCTCAAAATCCCCCTCAGTATCCAAGTTTTGGGGAGGATGAGCTTCAAAGCATTGTTCAGATGGGATTTGTCCAAAATCAAACCCAAGAAATATCATTGCAATCTCACAACTTCAACATAGGCTCAGACCAAATGAAAATTGAACTCTGA 1485 45.39 MENEFFLNATGISPSLMHFDSNPSMPTWHHQFSSAMVMDLQSQSQPQLHLHLPELNNHSSSSHQSPPPDCFLNPVPDQGFQFDSALSSMVSSPAASNSNLTNDGFVIRELIGKLAVNSERRILELNSSSSNVPEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFANYRSPLSIANEKLSRVSSSPSLKALGSETNLQEHKNHSSSQEDESSLSNPDKAISNPRKRKAITKAKLKEPVIEAPEKGSPKKIKAVETKENEKGNVKTEEDSKKTDANLAEEKQTNANSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLISKQMYQSGTSLPHPQISPIDSSASSFYGQHQNPSLPTTSHCSVDPLDSVLCQNLPIQLPPLNSFPQNPPQYPSFGEDELQSIVQMGFVQNQTQEISLQSHNFNIGSDQMKIEL 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12663433 12666331 - Tan0002030.1 Tan06g1211 755915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1211 494 SMART finulus 310 360 IPR011598 GO:0046983(InterPro)
Tan06g1211 494 FunFam Basic helix-loop-helix transcription factor 301 373 - -
Tan06g1211 494 Pfam Helix-loop-helix DNA-binding domain 308 355 IPR011598 GO:0046983(InterPro)
Tan06g1211 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 354 IPR011598 GO:0046983(InterPro)
Tan06g1211 494 Gene3D - 301 373 IPR036638 GO:0046983(InterPro)
Tan06g1211 494 MobiDBLite consensus disorder prediction 179 295 - -
Tan06g1211 494 CDD bHLH_AtBPE_like 294 380 - -
Tan06g1211 494 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 133 443 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan06g1211 494 MobiDBLite consensus disorder prediction 232 277 - -
Tan06g1211 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 369 IPR036638 GO:0046983(InterPro)
Tan06g1211 494 MobiDBLite consensus disorder prediction 179 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2267 Tan-Chr5:73960172 Tan06g1211 Tan-Chr6:12663433 2.00E-29 dispersed
Tan05g3007 Tan-Chr5:81996318 Tan06g1211 Tan-Chr6:12663433 2.40E-35 dispersed
Tan05g3008 Tan-Chr5:81996318 Tan06g1211 Tan-Chr6:12663433 1.90E-35 dispersed
Tan06g1211 Tan-Chr6:12663433 Tan10g1178 Tan-Chr10:11869697 4.60E-64 dispersed
Tan06g1211 Tan-Chr6:12663433 Tan06g1212 Tan-Chr6:12663433 3.70E-239 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27755 PF00010 HLH 3.80E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1211 - - - 0.0