Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1212 ATGGAGAACGAATTCTTCCTCAATGCTACTGGAATCTCTCCATCTCTTATGCATTTCGACTCCAATCCTTCTATGCCGACCTGGCACCACCAGTTTTCGTCCGCCATGGTCATGGATCTTCAATCTCAATCTCAACCTCAGCTTCATCTTCATCTTCCTGAGCTTAATAATCACTCTTCCTCCTCTCACCAATCGCCACCACCGGATTGCTTTCTCAATCCGGTTCCCGATCAGGGCTTCCAATTCGATTCGGCTCTGAGTTCGATGGTTTCTTCTCCCGCTGCGTCCAATTCTAACCTAACCAACGACGGCTTCGTGATCAGGGAACTGATCGGGAAATTAGCTGTGAATTCCGAGAGGAGAATCTTGGAATTGAATTCTTCCTCTTCGAATGTGCCGGAATTTTCGTCCGATCCTGGATTTGCAGAGCGGGCTGCTAGGTTTTCGTGTTTTGGTAGTAGGAGCTTCAATGGCCGTCAATTGACGAACGAATTCGCTAATTACAGATCTCCCCTCTCGATCGCGAACGAGAAATTGAGCCGAGTTTCGAGCAGTCCGTCGCTCAAGGCCCTCGGATCTGAAACCAATTTGCAGGAACACAAGAACCATTCCTCATCGCAAGAAGACGAATCGTCTCTCTCGAATCCAGACAAGGCGATTTCGAATCCACGGAAGAGAAAGGCAATTACGAAGGCCAAACTCAAAGAACCGGTGATCGAAGCTCCCGAAAAGGGAAGTCCGAAGAAAATCAAGGCAGTGGAAACGAAGGAAAACGAAAAAGGGAACGTGAAAACAGAGGAGGATTCGAAGAAAACCGATGCAAATTTAGCGGAAGAGAAGCAAACGAACGCGAATTCAAAGCCTCCTGAACCCCCAAAAGACTACATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGCCTCGCTGAAAGAGTTAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTAACTGGAAAAGCTCTAATGCTGGATGAGATTATCAACTATGTTCAGTCATTACAACACCAAGTTGAGTTTCTGTCCATGAAGTTGGCATCTGTGAATACAACCAGGGTGGATTTCAACATGGATTCTCTTATCTCAAAACAAATGTACCAATCAGGTACCAGTTTGCCACATCCTCAAATTTCCCCTATAGATTCCTCAGCTTCAAGCTTTTATGGGCAGCACCAAAATCCCTCTCTCCCAACTACCTCTCATTGCTCTGTGGACCCTCTTGACTCTGTTTTATGCCAAAATCTTCCAATTCAACTCCCTCCTCTCAATTCCTTCCCTCAAAATCCCCCTCAGGTAACTCGTTACGTTACGATCGAATCGCTCGTAAAGATTAATGTTATTCTCGTCCCTGAAACCCGACTAAAAAATTTTCATTTTTATGTACGACACACAGTATCCAAGTTTTGGGGAGGATGA 1476 45.46 MENEFFLNATGISPSLMHFDSNPSMPTWHHQFSSAMVMDLQSQSQPQLHLHLPELNNHSSSSHQSPPPDCFLNPVPDQGFQFDSALSSMVSSPAASNSNLTNDGFVIRELIGKLAVNSERRILELNSSSSNVPEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFANYRSPLSIANEKLSRVSSSPSLKALGSETNLQEHKNHSSSQEDESSLSNPDKAISNPRKRKAITKAKLKEPVIEAPEKGSPKKIKAVETKENEKGNVKTEEDSKKTDANLAEEKQTNANSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLISKQMYQSGTSLPHPQISPIDSSASSFYGQHQNPSLPTTSHCSVDPLDSVLCQNLPIQLPPLNSFPQNPPQVTRYVTIESLVKINVILVPETRLKNFHFYVRHTVSKFWGG 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12663433 12666331 - Tan0002030.2 Tan06g1212 755916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1212 491 SMART finulus 310 360 IPR011598 GO:0046983(InterPro)
Tan06g1212 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 354 IPR011598 GO:0046983(InterPro)
Tan06g1212 491 Gene3D - 301 373 IPR036638 GO:0046983(InterPro)
Tan06g1212 491 MobiDBLite consensus disorder prediction 179 295 - -
Tan06g1212 491 FunFam Basic helix-loop-helix transcription factor 301 373 - -
Tan06g1212 491 CDD bHLH_AtBPE_like 294 380 - -
Tan06g1212 491 MobiDBLite consensus disorder prediction 232 277 - -
Tan06g1212 491 Pfam Helix-loop-helix DNA-binding domain 308 355 IPR011598 GO:0046983(InterPro)
Tan06g1212 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 369 IPR036638 GO:0046983(InterPro)
Tan06g1212 491 MobiDBLite consensus disorder prediction 179 200 - -
Tan06g1212 491 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 133 413 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1212 Tan-Chr6:12663433 Tan10g1178 Tan-Chr10:11869697 1.60E-56 dispersed
Tan06g1211 Tan-Chr6:12663433 Tan06g1212 Tan-Chr6:12663433 3.70E-239 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27756 PF00010 HLH 3.70E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1212 - - - 0.0