Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g1212 | ATGGAGAACGAATTCTTCCTCAATGCTACTGGAATCTCTCCATCTCTTATGCATTTCGACTCCAATCCTTCTATGCCGACCTGGCACCACCAGTTTTCGTCCGCCATGGTCATGGATCTTCAATCTCAATCTCAACCTCAGCTTCATCTTCATCTTCCTGAGCTTAATAATCACTCTTCCTCCTCTCACCAATCGCCACCACCGGATTGCTTTCTCAATCCGGTTCCCGATCAGGGCTTCCAATTCGATTCGGCTCTGAGTTCGATGGTTTCTTCTCCCGCTGCGTCCAATTCTAACCTAACCAACGACGGCTTCGTGATCAGGGAACTGATCGGGAAATTAGCTGTGAATTCCGAGAGGAGAATCTTGGAATTGAATTCTTCCTCTTCGAATGTGCCGGAATTTTCGTCCGATCCTGGATTTGCAGAGCGGGCTGCTAGGTTTTCGTGTTTTGGTAGTAGGAGCTTCAATGGCCGTCAATTGACGAACGAATTCGCTAATTACAGATCTCCCCTCTCGATCGCGAACGAGAAATTGAGCCGAGTTTCGAGCAGTCCGTCGCTCAAGGCCCTCGGATCTGAAACCAATTTGCAGGAACACAAGAACCATTCCTCATCGCAAGAAGACGAATCGTCTCTCTCGAATCCAGACAAGGCGATTTCGAATCCACGGAAGAGAAAGGCAATTACGAAGGCCAAACTCAAAGAACCGGTGATCGAAGCTCCCGAAAAGGGAAGTCCGAAGAAAATCAAGGCAGTGGAAACGAAGGAAAACGAAAAAGGGAACGTGAAAACAGAGGAGGATTCGAAGAAAACCGATGCAAATTTAGCGGAAGAGAAGCAAACGAACGCGAATTCAAAGCCTCCTGAACCCCCAAAAGACTACATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGCCTCGCTGAAAGAGTTAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTAACTGGAAAAGCTCTAATGCTGGATGAGATTATCAACTATGTTCAGTCATTACAACACCAAGTTGAGTTTCTGTCCATGAAGTTGGCATCTGTGAATACAACCAGGGTGGATTTCAACATGGATTCTCTTATCTCAAAACAAATGTACCAATCAGGTACCAGTTTGCCACATCCTCAAATTTCCCCTATAGATTCCTCAGCTTCAAGCTTTTATGGGCAGCACCAAAATCCCTCTCTCCCAACTACCTCTCATTGCTCTGTGGACCCTCTTGACTCTGTTTTATGCCAAAATCTTCCAATTCAACTCCCTCCTCTCAATTCCTTCCCTCAAAATCCCCCTCAGGTAACTCGTTACGTTACGATCGAATCGCTCGTAAAGATTAATGTTATTCTCGTCCCTGAAACCCGACTAAAAAATTTTCATTTTTATGTACGACACACAGTATCCAAGTTTTGGGGAGGATGA | 1476 | 45.46 | MENEFFLNATGISPSLMHFDSNPSMPTWHHQFSSAMVMDLQSQSQPQLHLHLPELNNHSSSSHQSPPPDCFLNPVPDQGFQFDSALSSMVSSPAASNSNLTNDGFVIRELIGKLAVNSERRILELNSSSSNVPEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFANYRSPLSIANEKLSRVSSSPSLKALGSETNLQEHKNHSSSQEDESSLSNPDKAISNPRKRKAITKAKLKEPVIEAPEKGSPKKIKAVETKENEKGNVKTEEDSKKTDANLAEEKQTNANSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLISKQMYQSGTSLPHPQISPIDSSASSFYGQHQNPSLPTTSHCSVDPLDSVLCQNLPIQLPPLNSFPQNPPQVTRYVTIESLVKINVILVPETRLKNFHFYVRHTVSKFWGG | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 12663433 | 12666331 | - | Tan0002030.2 | Tan06g1212 | 755916 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g1212 | 491 | SMART | finulus | 310 | 360 | IPR011598 | GO:0046983(InterPro) | |
Tan06g1212 | 491 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 304 | 354 | IPR011598 | GO:0046983(InterPro) | |
Tan06g1212 | 491 | Gene3D | - | 301 | 373 | IPR036638 | GO:0046983(InterPro) | |
Tan06g1212 | 491 | MobiDBLite | consensus disorder prediction | 179 | 295 | - | - | |
Tan06g1212 | 491 | FunFam | Basic helix-loop-helix transcription factor | 301 | 373 | - | - | |
Tan06g1212 | 491 | CDD | bHLH_AtBPE_like | 294 | 380 | - | - | |
Tan06g1212 | 491 | MobiDBLite | consensus disorder prediction | 232 | 277 | - | - | |
Tan06g1212 | 491 | Pfam | Helix-loop-helix DNA-binding domain | 308 | 355 | IPR011598 | GO:0046983(InterPro) | |
Tan06g1212 | 491 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 302 | 369 | IPR036638 | GO:0046983(InterPro) | |
Tan06g1212 | 491 | MobiDBLite | consensus disorder prediction | 179 | 200 | - | - | |
Tan06g1212 | 491 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 133 | 413 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g1212 | Tan-Chr6:12663433 | Tan10g1178 | Tan-Chr10:11869697 | 1.60E-56 | dispersed | |
Tan06g1211 | Tan-Chr6:12663433 | Tan06g1212 | Tan-Chr6:12663433 | 3.70E-239 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27756 | PF00010 | HLH | 3.70E-06 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g1212 | - | - | - | 0.0 |