Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1245 ATGGCAAACACTAAAGTTTCATTGAAGAAAAAGAATGAGCTTCTTGTCTTAGCTCTCTTTGCTACTTTACTCACAAATGCTATTGTTGTCATTTCTGAAGTCAATTATGATGAGAATAGTCATAATAATGTGGGTGTTGTAAAACACTCATGTGCCACCACTCTTTATCCACAACTATGTCATTCAACAATATCCTCTATCATGGGAGCATCCGAGTTTTTGAGTGTAAAAGATATTGTTGAAATCTCGTTGAGTGTTGCTATAGATGCAGCTAAGCATAACCATGAAAACATCAAGAAACTTTTGATGTCGCTCAGTGATCTTACTAAACGAGAGAGAATGGCTCTCCGTGATTGTATCGAGACCACCGACAAGACGCTCGACGACCTTGACAAGGTCGTAGAGGATCTTCGTGAGTATCCAAAAAAGAAATCTCTCACCCTATATGCTGATGACCTCAAAACATTTCTCAGTTCCACCATGACCAACCAGGAGACTTGTTTGGAGGGATTCTCAGGCGACGAAGCTGAAAAAAGGGTGTTGAAATTGATTGAAACCCCACATATTCACGTGACAAAGCTGTGTAGTAATGTGCTAGCCTTGATCAAGAATTTGACTGACACTGATTTAACTTTAAGGGGCTTGGTCCCTGAGCACTCTAACAAGATAGCTTCATCCTGGCATGCTGATGACTCCAAAATTGTACTCTTTTCAGACGTTACCAACGAGGAGGAAGGTGAGAATAGGGGCAGGGAGGGTTTAGAAGATGGAATCAAGTGGCCAAAATGGATGTCAATTAGCGACGAGAGGCTTTTGGAGTCATCGTCAGAAGCGGCGGCGGCGGACGTGGTGGTGGCGGCGGACGGAAGTGGAAATTTTGGAACAGTGTCGGAGGCAGTGGCGGCGGCGCCGAATAAGAGCAGCAAAAGATATGTAATAAAAATAAAGGCCGGAGTTTACAAGGAAAATGTTGAAGTCCCAAGAAGTAAAAAGAATATTATGTTTTGGGGAGATGGAAGATCCAATACCATTATAACAGGTAGCAGAAGTTTTGGGACTGGCTGGACAACCTTCAATTCCGCCACAGTCGCTGCGGTGGGGGATGGATTCTTAGCTCGAGATATAACTATTGAAAACACAGCTGGAGCAGCCAATCACCAAGCCGTAGCTCTCCGCGTTGGATCAGATCACTCAGCCTTCTATCGTTGTGGCATTCAAGCCTACCAAGACACACTCTACGTTCACTCCAACCGCCAATTCTTCGTGAACTGTGTAATTGCAGGCACAATCGACTTCATATTCGGAAACGCAGCAGTAGTAATTCAAGACTCAGTGCTCACCCCTCGTCGACCAGACCCTAACCAACAGAACATGGTAACAGCACAAGGAAGAATCGAGGCCAATCAAAACACGGGAATTGTGATCCAAAAGTGCACGATTAAAGCAACCTCGGACTTAGAGCCAGTGATAAAAGAATTCCCAAGTTTCCTTGGTAGACCATGGAAGGAATATGCTAGGGTTGTGGTTATGCAAACAGATATTACCAATGTGATTGACCCAAAAGGGTGGGCGCCATGGAGTGGTGATTTTGCTCTTAAGACACTCTTCTTTGCAGAATATGACAACAAGGGAGATGGAGCCAATACATGTTGTAGGGTGGAGTGGTCCTCGCTTATTAATGCTGATCAAGCTAAGGCTTTTACGGCTGGACAATTCATTAGTGGTGCCGATTGGCTCCCATCCACTGCCTTCCCCTATCAGCTTGGCCTCTAA 1773 44.67 MANTKVSLKKKNELLVLALFATLLTNAIVVISEVNYDENSHNNVGVVKHSCATTLYPQLCHSTISSIMGASEFLSVKDIVEISLSVAIDAAKHNHENIKKLLMSLSDLTKRERMALRDCIETTDKTLDDLDKVVEDLREYPKKKSLTLYADDLKTFLSSTMTNQETCLEGFSGDEAEKRVLKLIETPHIHVTKLCSNVLALIKNLTDTDLTLRGLVPEHSNKIASSWHADDSKIVLFSDVTNEEEGENRGREGLEDGIKWPKWMSISDERLLESSSEAAAADVVVAADGSGNFGTVSEAVAAAPNKSSKRYVIKIKAGVYKENVEVPRSKKNIMFWGDGRSNTIITGSRSFGTGWTTFNSATVAAVGDGFLARDITIENTAGAANHQAVALRVGSDHSAFYRCGIQAYQDTLYVHSNRQFFVNCVIAGTIDFIFGNAAVVIQDSVLTPRRPDPNQQNMVTAQGRIEANQNTGIVIQKCTIKATSDLEPVIKEFPSFLGRPWKEYARVVVMQTDITNVIDPKGWAPWSGDFALKTLFFAEYDNKGDGANTCCRVEWSSLINADQAKAFTAGQFISGADWLPSTAFPYQLGL 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13834761 13841938 - Tan0010927.1 Tan06g1245 755949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1245 590 FunFam Pectinesterase 276 590 - -
Tan06g1245 590 NCBIfam pectinesterase inhibitor domain 16 206 IPR006501 GO:0004857(InterPro)
Tan06g1245 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 207 IPR035513 -
Tan06g1245 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 206 IPR035513 -
Tan06g1245 590 SUPERFAMILY Pectin lyase-like 277 588 IPR011050 -
Tan06g1245 590 ProSitePatterns Pectinesterase signature 2. 426 435 IPR033131 -
Tan06g1245 590 FunFam Pectinesterase 43 206 - -
Tan06g1245 590 Pfam Plant invertase/pectin methylesterase inhibitor 47 201 IPR006501 GO:0004857(InterPro)
Tan06g1245 590 CDD PMEI-like_3 50 206 - -
Tan06g1245 590 SMART PMEI_2 42 201 IPR006501 GO:0004857(InterPro)
Tan06g1245 590 Pfam Pectinesterase 282 575 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan06g1245 590 Gene3D - 276 590 IPR012334 -
Tan06g1245 590 PANTHER PECTINESTERASE 21 581 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2836 Tan-Chr4:87758132 Tan06g1245 Tan-Chr6:13834761 1.30E-182 dispersed
Tan06g0058 Tan-Chr6:751932 Tan06g1245 Tan-Chr6:13834761 1.40E-176 dispersed
Tan06g1245 Tan-Chr6:13834761 Tan07g0472 Tan-Chr7:8595177 3.50E-103 dispersed
Tan06g1245 Tan-Chr6:13834761 Tan06g1246 Tan-Chr6:13886207 1.9e-311 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1245 K01051 - csv:101221055 754.592