Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1246 ATGGCAAACACTAAAGTTTCATTGAAGAAAAAGAATGAGCTTCTTGTCTTAGCTCTCTTTGCTACTTTACTCACAAATGCTATTGTTGTCATTTCTGAATTCAATTATGATGAGAATAGTCTTAACAATGTGGGTATTGTAGAACACTCATGTGCCACCACTCTTTATCCACAACTATGTCATTCAACAATATCCTCCATCGTGGGAGCATCCGAGTTTTTGAGTGTAAAAGATATTGTTGAAATCTCGTTGAGTGTTGCTATAGATGCAGCTAAGTATAACCATGAAAACATCAAGAAACTTTCGATGTCGCTCAATGATCTTACTAAACGAGAGAGAATCACTCTCCGTGATTGTATCGTGACCACCGACAAGACGCTCGAAGACCTTGACAAGGTCGTAGAGGATCTTCGTGAGTATCCAAATAAGAAATCTATTATCCTATATGCTGATGACCTCAAAACGTTTCTCAGTTCTGCCATGACCAACCAGGAGACTTGTTTGGATGGATTCTCAGACGAGGAAGCTGAAAAAAGGGTGTTGAAATTGATTGAAACCCCACATATTCACGTGACAAAGTTGTGTAGTAATGTTCTAGCCCTGGTCAAGAATTTGACTGACACTGATTTAACTTTAAGGGGCTTGGTCCCTGAGGACCCTAATAAGATAGCTTCATCCTGGCATGCTTACGAATCCGACCCCAAAATTGTACTCTTTTCAGACCTTACTAACGAGGAGGAGATAAGGGAGGGTTTAGAAGATGGAATCAAGTGGCCAAAATGGATGTCAATTAGCGACCAGAGGCTTTTGGAGTCATCATCAGAAGCGGCGGCGGCGGACGTGGTGGTGGCGGCGGATGGAAGTGGAAATTTTAGAACGGTGTCGGAGGCAGTGGCGGCGGCGCCGAATAAGAGCAGCAAAAGATATGTAATAAGAATAAAGGCTGGAGTTTACAGGGAAAATGTTGAAGTCCCAAGTAATAAGAAGAATATTATGTTTTGGGGAGATGGAAGATCCAATACCTTTATCACAGCTAGCAGAAGTAATGGGACTGGCTGGTCAACCTTCGATTCCGCCACTGTCGTTGCGGTGGGGGATGGATTCTTAGCTCGAGACATAACCATTGAAAACAAAGCAGGAGCAGCCAATCACCAAGCCGTAGCTCTCCGCGTTGGGTCAGATCACTCAGCCTTCTATCGTTGTGGCATTCAAGCCTACCAAGACACACTCTACGTTCACTCCAACCGCCAATTCTTCGTGAACTGTGTAATTGCAGGCACAATCGACTTCATATTCGGAAACGCAGCAGTAGTAATTCAAGACTCAGTGCTCACCCCTCGTCGACCAGACCCTAACCAACAGAACATGGTAACAGCACAAGGAAGAACCGAGGCCAATCAAAACACGGGAATTGTGATCCAAAAGTGCACGATTAAAGCAACCTCGGACTTAGAGCCAGTGATAAAAGAATTCCCAAGTTTCCTTGGTAGACCATGGAAGGAATATGCTAGGGTTGTGGTTATGCAAACAGATATTACCAATGTGATTGACCCAAAAGGGTGGGCGCCATGGAGTGGTGATTTTGCTCTTAAGACACTCTTCTTTGCAGAATATGACAACAAGGGAGATGGAGCCAATACATGTTGTAGGGTGGAGTGGTCCTCGCTTATTAATGCTGATCAAGCTAAGGCTTTTACGGCTGGACAATTCATTAGTGGTGCCGATTGGCTCCCATCCACTGCCTTCCCCTATCAGCTTGGCCTCTAA 1767 44.43 MANTKVSLKKKNELLVLALFATLLTNAIVVISEFNYDENSLNNVGIVEHSCATTLYPQLCHSTISSIVGASEFLSVKDIVEISLSVAIDAAKYNHENIKKLSMSLNDLTKRERITLRDCIVTTDKTLEDLDKVVEDLREYPNKKSIILYADDLKTFLSSAMTNQETCLDGFSDEEAEKRVLKLIETPHIHVTKLCSNVLALVKNLTDTDLTLRGLVPEDPNKIASSWHAYESDPKIVLFSDLTNEEEIREGLEDGIKWPKWMSISDQRLLESSSEAAAADVVVAADGSGNFRTVSEAVAAAPNKSSKRYVIRIKAGVYRENVEVPSNKKNIMFWGDGRSNTFITASRSNGTGWSTFDSATVVAVGDGFLARDITIENKAGAANHQAVALRVGSDHSAFYRCGIQAYQDTLYVHSNRQFFVNCVIAGTIDFIFGNAAVVIQDSVLTPRRPDPNQQNMVTAQGRTEANQNTGIVIQKCTIKATSDLEPVIKEFPSFLGRPWKEYARVVVMQTDITNVIDPKGWAPWSGDFALKTLFFAEYDNKGDGANTCCRVEWSSLINADQAKAFTAGQFISGADWLPSTAFPYQLGL 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13886207 13892988 - Tan0007352.1 Tan06g1246 755950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1246 588 NCBIfam pectinesterase inhibitor domain 17 206 IPR006501 GO:0004857(InterPro)
Tan06g1246 588 Gene3D - 274 588 IPR012334 -
Tan06g1246 588 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Tan06g1246 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 206 IPR035513 -
Tan06g1246 588 ProSitePatterns Pectinesterase signature 1. 305 324 IPR018040 -
Tan06g1246 588 SMART PMEI_2 42 201 IPR006501 GO:0004857(InterPro)
Tan06g1246 588 CDD PMEI-like_3 50 206 - -
Tan06g1246 588 Pfam Plant invertase/pectin methylesterase inhibitor 47 201 IPR006501 GO:0004857(InterPro)
Tan06g1246 588 PANTHER PECTINESTERASE 19 579 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan06g1246 588 SUPERFAMILY Pectin lyase-like 275 586 IPR011050 -
Tan06g1246 588 FunFam Pectinesterase 43 206 - -
Tan06g1246 588 Pfam Pectinesterase 280 573 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan06g1246 588 FunFam Pectinesterase 274 588 - -
Tan06g1246 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 207 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1246 Tan-Chr6:13886207 Tan07g0472 Tan-Chr7:8595177 9.60E-101 dispersed
Tan06g1245 Tan-Chr6:13834761 Tan06g1246 Tan-Chr6:13886207 1.9e-311 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1246 K01051 - csv:101221055 772.311