Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1318 ATGGAAGCCTCCTTTGCAACATATTCCCATGTTTCTTTCATCCTGATCTTGATTCTTTCCCTCTTTCCCTACCAGCTCCTCAGCCAACAGCCGTATGATGAAAATGCCACAAGTTGCTCTATCAATGACACTGCTCTCAAAGGATATAATTGTACTCATTATGATTCTCCTCAGTCATGTTATTCCTATTTGGTTGTAACATCCAATTCTCACACTCTTGGCTGGGGTTACATTCAAAAGATCTCATTGGGAAACAGAACTTTGCTCGTGAGTAGAGCTTATTGCACATGTGTGGGTTCTTTCTATCAGTCCTCAAACTATGATTACTCAATTCAGAGGGGGGACAGTTATGAAAAAATAGCAAACAATATTTTCCATGGCTTTGCTAGCTGTTCCATGTTGAGGACTGTCAACTTCAACTATTCTATTGATGATACTTCAATAGGCAAAAGTCTTCAAGTTCCGTTGCGATGTGCTTGTCCTACGAAGGCTCAAACAGCTAAGGGAATTGCCTCTTTGGTTGTGTATATGATACAACCAAATGAGACCGTTGGATCCATTGCAAGGGATTTTGGTGTTGATGAACAAAGCATTTTTGGAGCAAATATGCTTTCAAATTCGAGCCACATCTATCCATTTACGCCACTTTTGGTACCGTTTGGCCAAAATAAGACTTGCACCATAGACCCATATTTCGCATCCATGGACCCATATTTCCCACCCCACTGCCCTAACAGGCCTACCTTTAGTTCAAGGAAACTTAATCGTATTGTCGCCGTGGTCATCATCAGTGTAATAGGTGGTGTAATAGTATTATTATGTACTTTCTTTTGTGGATGTAAAGGACATCAAGTATTCACTCGAAAAAGAAGACGCAAACTTGGTAAGAAAAAGTTTTTCAAGCAAAATGGAGGTCATTTATTACAAGAAAAACTACTGGAAGAAAATGAGAGAGTTAAAATATTTACCCAAGAAGAACTTGAACAAGCAACAGATAACTACAATGAAAATAGGTTTCTTGGTCAAGGAGGGTATGGCACAGTTTACAAGGGGATACTCCATGACAATACCGTTGTTGCAATCAAAAGGTCTAAGCAAATCGAGACTACTTGGATTGAACAGTTCATTAATGAAGTTATCATCCTTTCTCAAATTAACCACAGAAATATTGTTAGACTTCTTGGTTGTTGTTTAGAAACTGAATTCCCATTGCTAGTTTATGAATTCGTTTCCAATGGGACACTTTCACAACACATTCATAAGGAAGATCTTGATGAATCACCTTCTCTTTCTTGGGAAAATCGTCTCAATATCGCTTCTGAAGTTGCAGGAGCTATATCTTACATGCATTCTGCAGCTTCAATTCCCATCTTTCACAGAGATATCAAGTCTTTAAACATACTTTTGGATGATACTTATTGTGCAAAAGTTTCTGACTTTGGAACATCAAGATTTGTGTCTTGTGATCAATCTCATTTGACTACAAAAGTGCTCGGAACTTTTGGATATATAGATCCTGAGTACTTCAGATCAAGTCAATACACTGAAAAGAGTGATGTATATAGCTTCGGAGTCTTGATGGTAGAGCTTTTAACTGGGAAGTTACCTGTCACTTTCGCAAAAACTGATGGTGGGAATCTATTAGACTACTTCATTTCATTGGAAAGGACTAATCAACTTATTGAAATTTTAGATGTTACCGTTGCCAACGAAGAAAGGATGGAGGTTGTTAAGCATGTTGCGGCACTTGCCATAAAATGTTTAAGATCAAATGGGAAAGCAAGGCCTACGATGAAACAAGTATATTTGGAACTAGAGGGATTGAGAAAGTCCCAAAATTGTTTGGGAATTGTTGAAGAAAGTCATTCAAGAACTTTTTCATTGGTGCACTCCTTTGAGTTTAGTGATGACGAACTTCCTTTGAGTTTAGTGATGACGAACTTCTAA 1947 38.06 MEASFATYSHVSFILILILSLFPYQLLSQQPYDENATSCSINDTALKGYNCTHYDSPQSCYSYLVVTSNSHTLGWGYIQKISLGNRTLLVSRAYCTCVGSFYQSSNYDYSIQRGDSYEKIANNIFHGFASCSMLRTVNFNYSIDDTSIGKSLQVPLRCACPTKAQTAKGIASLVVYMIQPNETVGSIARDFGVDEQSIFGANMLSNSSHIYPFTPLLVPFGQNKTCTIDPYFASMDPYFPPHCPNRPTFSSRKLNRIVAVVIISVIGGVIVLLCTFFCGCKGHQVFTRKRRRKLGKKKFFKQNGGHLLQEKLLEENERVKIFTQEELEQATDNYNENRFLGQGGYGTVYKGILHDNTVVAIKRSKQIETTWIEQFINEVIILSQINHRNIVRLLGCCLETEFPLLVYEFVSNGTLSQHIHKEDLDESPSLSWENRLNIASEVAGAISYMHSAASIPIFHRDIKSLNILLDDTYCAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPVTFAKTDGGNLLDYFISLERTNQLIEILDVTVANEERMEVVKHVAALAIKCLRSNGKARPTMKQVYLELEGLRKSQNCLGIVEESHSRTFSLVHSFEFSDDELPLSLVMTNF 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15821162 15823953 + Tan0010849.1 Tan06g1318 756022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1318 648 SUPERFAMILY Protein kinase-like (PK-like) 320 628 IPR011009 -
Tan06g1318 648 CDD LysM 174 218 IPR018392 -
Tan06g1318 648 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1318 648 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 123 611 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Tan06g1318 648 Coils Coil 313 333 - -
Tan06g1318 648 Pfam Protein kinase domain 334 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1318 648 SUPERFAMILY LysM domain 174 219 IPR036779 -
Tan06g1318 648 Gene3D Phosphorylase Kinase; domain 1 307 409 - -
Tan06g1318 648 FunFam Wall-associated receptor kinase 2 307 409 - -
Tan06g1318 648 CDD STKc_IRAK 340 608 - -
Tan06g1318 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan06g1318 648 Gene3D LysM domain 163 227 IPR036779 -
Tan06g1318 648 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524(InterPro)
Tan06g1318 648 Pfam LysM domain 176 219 IPR018392 -
Tan06g1318 648 Gene3D Transferase(Phosphotransferase) domain 1 410 626 - -
Tan06g1318 648 SMART serkin_6 334 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1318 648 FunFam Wall-associated receptor kinase 2 410 627 - -
Tan06g1318 648 ProSiteProfiles LysM domain profile. 174 218 IPR018392 -
Tan06g1318 648 SMART LysM_2 175 219 IPR018392 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1316 Tan-Chr6:15719535 Tan06g1318 Tan-Chr6:15821162 0.00E+00 dispersed
Tan06g1318 Tan-Chr6:15821162 Tan09g0563 Tan-Chr9:50091053 9.50E-235 dispersed
Tan06g1318 Tan-Chr6:15821162 Tan06g1320 Tan-Chr6:15882723 4.80E-303 proximal
Tan06g1317 Tan-Chr6:15790232 Tan06g1318 Tan-Chr6:15821162 2.30E-285 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67779 PF00069 Pkinase 2.60E-51 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1318 - - - 0.0