Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1320 ATGCAAATTACAATAATGGAAGGCTCCTTTGCATCATGTTGCTGTGTTTGTTTCATGTTCTTGATCCTTTCCCTCTTTCCCTACCAGCTTCTCAGCCAACAACCATATGATGGAAATGCGACCAGTTGCTCTATCAATGACACGACTCCCAAAGGATACACTTGTACTGATTCTTTTCAATCATGTTATTCCTATTTGGCTCTAACATCCAATTCTCATACTCTTGGCTTCTACGTCCAACCACCGTATAAAGTTTATTGCAAATGTGTAGGTTCTTTCTATCAGTCCCTCGACAATGATTACTTAGTTCAGAGCGGGGACAGTTATGAAAAAATAGCGAACGATATTTTCCATGGCTTTACTAGTTGTTCGATGTTGAGAACTGTGAACTTTAACTATTCTATTGATGATACTTCCATAAACAAAAGACTTCAAGTTCCGTTGCGATGTGCTTGTCCTACGAAAGCTCAGACAGCTAAGGGAATTGCCTCTTTAGTTGTGTATATGCTACAACCAAATGAGACCATTGGATCCATTGCAAGGGAGTTTAGGGTCGATGAAGAAAGCATTTTTGGAGCAAATATGCTTTCAAATTCGAGCCACATCTATCCATTTGCGCCTCTTTTAGTTCCGTTGGGCCAAGATGAGACTTGCTTCATAGACTCAGATTTCTCATACAACTGCCCTGGCAGGCCTACCTTTCATACAAGGGAACTTAAGCTTATTGACATCATCATCATCAGTGCAATAGGTGGTGCAATAGTATTAATATGTACTTTCTTTTGTGGATGCAAAGGACATCAAGTACTCACTAAGAAAAGAAGACTCAAACTTGGTAAAAAAAAGTTTTTCAAGCAAAATGGTGGTCATTTATTACAAGAAAAACTACTTGAAGAAAATGAGAGAGTTAAAATATTTACACAAGAAGAACTTGAACAAGCAACGGATAACTATAGTGAAAATAGGTTTCTTGGTCAAGGAGGGTATGGCACAGTTTACAAAGGGATACTAAATGACAACACTGTTGTGGCAATCAAAAGGTCCAAGCAAATCGAGACTAATTGGATTGAACAGTTTATTAATGAAGTTATTATCCTTTCTCAAATTAACCATAGAAATATTGTTAGACTCTTGGGTTGTTGTTTAGAAACTGAGTTCCCATTGCTTGTTTATGAATTCGTTTCCAATGGGACACTTTCACAACATATTCATAAGGAAGATCTTGATGAATCACGTTCTCTTTCTTGGGAAAATCGTCTCAACATCGCTTCTGAAGTTGCGGGAGCTATATCTTACATGCATTCTGCAGCTTCAATTCCTATTTTTCACAGAGATATCAAGTCTTTAAACATACTTTTGGATGATAGTTATTGTGCAAAGGTTTCTGACTTTGGAACATCAAGATTTGTGTCTTGTGATCAATCTCACTTGACTACAAAAGTGCTTGGAACTTTTGGGTATATAGATCCTGAGTATTTCAGATCAAGTCAATACACCGAAAAAAGTGATGTATATAGCTTTGGAGTGTTAATGGTGGAGCTTTTAACTGGGAAGCTACCTATTACTTTTGCTAAAAATGATGGTGGAAATCTATTAGACTACTTCATTTCATTGGAAAGGACTAATCAACTTGTTGAAATTTTAGATGTTCCAGTTGCCAAGGAAGAAAGGATGGACGTTGTTAACAATGTCGCGACACTTGCTATAAAATGTTTAAGACCAAATGGAAAAGCAAGGCCTACGATGAAACAAGTATATTTGGAGTTAGAGGGATTGAGAAAGTCCCAAACTTGTTTGGGAATTGTTGAAGAAAATCATTCAAGAACTTTGTCATTGATGCACTCCTTTGAGGTTAGTGATGATGAGCTTCTAAGATGA 1878 37.11 MQITIMEGSFASCCCVCFMFLILSLFPYQLLSQQPYDGNATSCSINDTTPKGYTCTDSFQSCYSYLALTSNSHTLGFYVQPPYKVYCKCVGSFYQSLDNDYLVQSGDSYEKIANDIFHGFTSCSMLRTVNFNYSIDDTSINKRLQVPLRCACPTKAQTAKGIASLVVYMLQPNETIGSIAREFRVDEESIFGANMLSNSSHIYPFAPLLVPLGQDETCFIDSDFSYNCPGRPTFHTRELKLIDIIIISAIGGAIVLICTFFCGCKGHQVLTKKRRLKLGKKKFFKQNGGHLLQEKLLEENERVKIFTQEELEQATDNYSENRFLGQGGYGTVYKGILNDNTVVAIKRSKQIETNWIEQFINEVIILSQINHRNIVRLLGCCLETEFPLLVYEFVSNGTLSQHIHKEDLDESRSLSWENRLNIASEVAGAISYMHSAASIPIFHRDIKSLNILLDDSYCAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPITFAKNDGGNLLDYFISLERTNQLVEILDVPVAKEERMDVVNNVATLAIKCLRPNGKARPTMKQVYLELEGLRKSQTCLGIVEENHSRTLSLMHSFEVSDDELLR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15882723 15886135 + Tan0009845.1 Tan06g1320 756024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1320 625 SMART LysM_2 167 211 IPR018392 -
Tan06g1320 625 FunFam Wall-associated receptor kinase 2 291 393 - -
Tan06g1320 625 Pfam LysM domain 168 211 IPR018392 -
Tan06g1320 625 ProSiteProfiles LysM domain profile. 166 210 IPR018392 -
Tan06g1320 625 Coils Coil 297 317 - -
Tan06g1320 625 CDD STKc_IRAK 324 592 - -
Tan06g1320 625 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524(InterPro)
Tan06g1320 625 FunFam Wall-associated receptor kinase 2 394 611 - -
Tan06g1320 625 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 84 595 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Tan06g1320 625 CDD LysM 166 204 IPR018392 -
Tan06g1320 625 ProSiteProfiles Protein kinase domain profile. 318 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1320 625 Gene3D Phosphorylase Kinase; domain 1 291 393 - -
Tan06g1320 625 Gene3D LysM domain 153 218 IPR036779 -
Tan06g1320 625 SMART serkin_6 318 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1320 625 SUPERFAMILY Protein kinase-like (PK-like) 302 589 IPR011009 -
Tan06g1320 625 Pfam Protein kinase domain 318 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan06g1320 625 Gene3D Transferase(Phosphotransferase) domain 1 394 610 - -
Tan06g1320 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1317 Tan-Chr6:15790232 Tan06g1320 Tan-Chr6:15882723 1.40E-266 dispersed
Tan06g1320 Tan-Chr6:15882723 Tan09g0563 Tan-Chr9:50091053 4.10E-235 dispersed
Tan06g1318 Tan-Chr6:15821162 Tan06g1320 Tan-Chr6:15882723 4.80E-303 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67780 PF00069 Pkinase 2.70E-51 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1320 - - - 0.0