Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1409 ATGGCCGGCTTGGTCACCGGTTCCCAACACTATCCCCATGCTGCCGATGAGAGTCTTCGTGGACCTTCACCATCGTCCAAAACATGTCGAGTTTGTGGCGATGAAATAGGACTCAAGGAAGATGGAAAAGTATTCGTGGCATGTCTAGTGTGCAATTTCCCTGTTTGTCGCCCTTGTTATGAGTATGAAAGGAGCGAAGGCAACAAATGTTGTCCTCAGTGCAACACTCGTTACAAGCGTCATAAAGGCTCTCCGAGAGTCATTGGCGATGACGAAGAAGTTGACGATGCAGATGATTTTGATGATGAATTTCCCATCAAACACCACGATGTCAACTTTGAAACAAAACAGACTAATCATTCGGTGGAAAACGATAATTACAATCAGCAGAATTGGCATCAAAATCTCCAGACTTCCTTCTCTGTTGCAGGCAGTGTGAACGGGAAGGATTTGGAAGGGGAGAAGGAGAGTTATGGTTACGGGAACGCAGAATGGAAGGAGAGGATTGATAAATGGAAAGTGAGGCAACAGAAGAGAGGATTGAGTACCTCTACCAACGATCAACCCGCCGAAGAAGACGACTATCTCTTAGCAGAAGCTCGTCAACCACTATGGCGGAAACTCCCAATTTCCTCAAGTAAAATCAGTCCATATCGCATTGTCATAGTCCTTCGTCTCGTCATTCTCGCATTCTTCTTCCGCTTCCGAATCCTCACTCCTGCCTACGACGCCTTCCCCTTGTGGCTCATTTCCGTCATCTGCGAAATCTGGTTCGGTTTCTCCTGGATTCTCGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAAACCTACCTCGATCGCCTTTCCATGCGGTTCGAGCGGGACGGGGAGCCAAACCGCCTCGCGCCGATCGACTTCTTTGTGAGTACGGTGGATCCTCTCAAGGAGCCGCCGATCATAACGGCGAATACGGTGCTGTCCATTCTGTCTGTGGACTATCCGGTGGAGAAGGTCAGCTGCTACGTTTCCGACGACGGAGCGTCGATGCTTCTGTTCGATACGCTGGCGGAGACGGCGGAGTTTGCGAGGCGATGGGTGCCGTTCTGCAAGAAGTTCAGCGTGGAGCCTAGGGCTCCGGAGTTTTACTTCTCCCAGAAGATGGATTACTTGAAGGACAAGGTGCTACCGAGCTTTGTGAAGGAGAGGAGAGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAAGGATGGGTGATGCAGGATGGCACTCCATGGCCGGGAAACCTCACCCGTGATCATCCAGGCATGATACAGGTGTATCTAGGAAGTGAAGGTGCACTTGATGTAGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAGCACCACAAAAAAGCTGGTGCTATGAATGCTCTTGTTCGAGTCTCTGCAGTCCTCACAAATGCACCATTCATCTTGAATCTGGATTGTGATCACTACGTCAACAATAGCAAGGCTGTAAGGGAAGCCATGTGCTTTCTAATGGATCCTCAGCTCGGAAAGAAACTATGCTATGTTCAGTTTCCTCAAAGATTTGATGGCATTGATCGTCATGACAGATATGCTAATCGGAATATCGTGTTCTTTGATATCAACATGCGAGGACTAGATGGAATCCAAGGTCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATACGGATATGAACCACCAGCCTCCGAGAAAAGGCCGAAGATGACATGCGATTGCTGGCCTTCATGGTGTTGCTGCTGCTGCGGTGGTTCAAGGAAGTCGAAGTTAAAGAAGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCACAAAGAAGAAGAAAATGATGGGGAAGAGTTACGTAAGGAAAGGGTCTGGACCCGTTTTTGATCTTGAAGAGATTGAAGAAGGGTTTGAAGGTTATGATGAGTTGGAGAAGTCATCACTCATGTCGCAAAAGAATTTCGAGAAAAGATTTGGGCAGTCGCCAGTTTTCATTGCCTCCACCCTCAAGGAAGATGGAGGTCTTCCAGAAGGGACTAACAGCACATCACTTGTTAAAGAGGCCATCCATGTGATAAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAGGAGGTTCGTGGCTGA 2202 48.27 MAGLVTGSQHYPHAADESLRGPSPSSKTCRVCGDEIGLKEDGKVFVACLVCNFPVCRPCYEYERSEGNKCCPQCNTRYKRHKGSPRVIGDDEEVDDADDFDDEFPIKHHDVNFETKQTNHSVENDNYNQQNWHQNLQTSFSVAGSVNGKDLEGEKESYGYGNAEWKERIDKWKVRQQKRGLSTSTNDQPAEEDDYLLAEARQPLWRKLPISSSKISPYRIVIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFERDGEPNRLAPIDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSVEPRAPEFYFSQKMDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPASEKRPKMTCDCWPSWCCCCCGGSRKSKLKKKGERGLLGGLFTKKKKMMGKSYVRKGSGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEVRG 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18243052 18248592 + Tan0000895.2 Tan06g1409 756113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1409 733 CDD mRING-HC-C4C4_CesA 27 77 - -
Tan06g1409 733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 103 IPR013083 -
Tan06g1409 733 Coils Coil 396 416 - -
Tan06g1409 733 Pfam Zinc-binding RING-finger 25 95 IPR027934 -
Tan06g1409 733 SUPERFAMILY RING/U-box 24 100 - -
Tan06g1409 733 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 210 731 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Tan06g1409 733 MobiDBLite consensus disorder prediction 1 27 - -
Tan06g1409 733 FunFam Cellulose synthase 13 103 - -
Tan06g1409 733 Pfam Cellulose synthase 298 731 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Tan06g1409 733 SUPERFAMILY Nucleotide-diphospho-sugar transferases 311 586 IPR029044 -
Tan06g1409 733 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 590 IPR029044 -
Tan06g1409 733 FunFam Cellulose synthase 415 589 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1409 Tan-Chr6:18243052 Tan10g1797 Tan-Chr10:55052167 1.90E-260 dispersed
Tan06g1408 Tan-Chr6:18243052 Tan06g1409 Tan-Chr6:18243052 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1409 K10999 - csv:101205733 1310.43