Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1439 ATGCCGTCTGAAGTATTGGACCTGAAGGGTTTGTCTTCATCTTCCTTCTTCTCCGACGATTTACATCATTCAGATGAGGGGCAGGTTGGAGTTTGGAAGTCAGCTAGTATGCCTAATCACCGTGCCAGTAACATGTCAGGTGCTTCATCATCTGTGGAAAAATTTTCAATAGGTGATTGCCTGACAGAGAACTCATTGGAAAATCATGAATCATTTCCTGTGAGAGACCAGAATGCAAGTCTTATCCTGAATAGACATGCTGTTGGAGCTGAAAGAACATCCAATTATTTTGCTAGAAGTAATGAAGTCAATATTATGAATTCTCAGTATGAGAGTAGTCTCTTCTCAAGTTCTTTATCAGATATATTTACTAGGAAGTTGCGATTTTCTCCCAGCAATGCACTATATGGCCATTCTGTTGATACTGTGGCATCTCACTTTGAGGAGGAGGAGGTTTTTGAGTCTCTTGAAGAATTGGAGGCCCAAACCATTGGAAACCTCCTCCCTGATGACGATGACTTACTTGCTGGAGTACTAACTGATGGGCTTGATTGTTTGGTTGAAACAAATGGCGAGGATGATGCTGAGGACTTGGATTTCTTTAGCAATGTTGGAGGGATGGATTTGGGTGATGATGGTTTATCTGTTGGACAGAAAAATTCTGAGTCTTCTGGAGGACTTTTTAACAATTTACCGGGGATGCATAATGGTGCTATGGCTGGAGAGCATCCTTTAGGTGAACATCCTTCCAGGACACTGTTTGTGAGAAACATAAATAGCAATGTTGAAGATTCTGAATTGAAGGTCCTTTTTGAGCAATATGGAGACATTCGCACTCTTTATACGGCATGCAAACATCGAGGGTTTGTTATGATATCCTATTATGATATTAGAGCTGCCCGTAATGCAATGAAAGCACTCCAGAATAAACCGTTGAGACGAAGGAAGCTTGACATACATTATTCTATACCGAAGGACAATCCTTCTGAAAAAGATATTAACCAAGGAACTCTTGTTGTTTTTAACCTTGAGTCTTCTGTTTCTAATGAAGAACTTCGTCAAATATTCGGTGTCTATGGAGAAATCAAGGAGATTCGTGAAGCCCCCCACAGAAGTCATCATAAATTCATTGAATTTTATGATATCAGAGCTGCAGAGGCTGCTCTTTGTGCATTAAACCTGAGTGATATAGCAGGAAAGCAGATAAAGCTTGAGCCAAGTCGTCCTGGTGGTGTGAGACGCAGCAGTTTGGTGCAACAATTCCATCCACAGTTGGAGCGGGAAGATATTGGTCTCTATTTGCAACAGGGTAGCCCTCCCGTTAATTGTAGTGCCGGCTTCTCTGGCTTAGTTCCTAGTGGGACTATCAAGTCTAGCAGCATGAGTAATGGATCTGTTCTTGGAGTACACTCTATGATACGAGCTCCATCTCTGGAGACTGTGTTGCATCATGGGATATCTTCTAGCGTTCCTAGTAGCTTACCTTCTGTGATGAGATCTGAATCAATTGGAAACCAATCTGGTTTCATTGACTCTAGTCACTCACCTTCACAACTAAAGCTGGGTATCCGGGCAGCTCCATCTATTCATCCTCATTCACTTCCAGAACATCCTGATGGTTTGAACAACAATGTTCACTGCAATTCTCTGAATACAATTGCAGGAAACATCAGTTTACGACCACCCGAAAGAGCTGATAGCAGGCAGCTAGTAAACTTTAATGGTCGCTCTATTGAATTGAATGAAGATGTTTTTGCATCTGGTGGTAACAGAACTTGCCCGATTCCTGGACCTCATTATACATGGGGTAACTCCTACCGGCCCCAGCCTCCAGCTCCAGGTGTTGTATGGCCGAATTCTCCATCTTATATGAATGGGATTTCTGCTGCTCATACCCCAACCCAAGTCCATGGAGTTCCAAGAGCAGCTTCTCATTTGATGCACACAGTTCTCCCCATGAATAACCACCATGTTGGATCGGCACCGGCTGTTAATCCTTCTATTTGGGATAGACAACATGCTTATGCTGGGGAATTGTCAAAAGCCTCTGGCTTTCATTCAGGCTCTATAGGGAATATGAATCTGCCTAACAATTCACCGCAGTCTATGGAGTTTTTCTCTCATATCTTCCCACAAGTTGGTGGAAATTCTGTAGAGCTTCCCATCCCGCAAAGGAATGTAGGACTTCAATCTCATCATCAGCGGTGCATGGTTTTCCCTGGGCGAGGCCAAATTCTTCCAATGATGAATTCATTTGACTCTACGAATGAACGTGGTAGAAGCCGAAGAAATGAAGCAGCCTCTAATCAAGCAGATAAGAAGCAATATGAACTTGATATTGATCGCATAATGAGGGGTGAAGACAATCGCACTACACTTATGATAAAGAACATTCCTAACAAATACACATCAAAGATGCTTTTGGCTGCAATTGATGAACGCCATCGAGGAACTTATGACTTCATCTATCTGCCTATTGACTTTAAGAACAAATGTAACGTGGGATATGCGTTCATTAACATGACTGATCCTAGCCTAATCATTCCATTCTATGAGGCATTTAATGGGAAAAAATGGGAGAAATTCAATAGTGAGAAGGTGGCATCACTTGCATATGCTCGCATACAGGGAAAAGCTGCTCTCATTGCTCATTTCCAGAATTCAAGCTTAATGAATGAAGATAAGCGATGTCGACCAATCCTTTTCAACACTGATGGCCCCAATGCAGGTGATCAGGTTCCGTTTCCAATGGGGGTAAATGTTCGTACTAGGCCTGGAAAAGCCCGAACCAATACCCAGGAGGAAAATCATGATGAAGGTCTAGTAATTTCTGGAAATGGTGAGAATTGTTCGAGTGGAGATGCATCTTCTTCTTCATTTCTTGTAAAGGATTTGGACCAGCCAGTACCATAA 2913 42.4 MPSEVLDLKGLSSSSFFSDDLHHSDEGQVGVWKSASMPNHRASNMSGASSSVEKFSIGDCLTENSLENHESFPVRDQNASLILNRHAVGAERTSNYFARSNEVNIMNSQYESSLFSSSLSDIFTRKLRFSPSNALYGHSVDTVASHFEEEEVFESLEELEAQTIGNLLPDDDDLLAGVLTDGLDCLVETNGEDDAEDLDFFSNVGGMDLGDDGLSVGQKNSESSGGLFNNLPGMHNGAMAGEHPLGEHPSRTLFVRNINSNVEDSELKVLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDINQGTLVVFNLESSVSNEELRQIFGVYGEIKEIREAPHRSHHKFIEFYDIRAAEAALCALNLSDIAGKQIKLEPSRPGGVRRSSLVQQFHPQLEREDIGLYLQQGSPPVNCSAGFSGLVPSGTIKSSSMSNGSVLGVHSMIRAPSLETVLHHGISSSVPSSLPSVMRSESIGNQSGFIDSSHSPSQLKLGIRAAPSIHPHSLPEHPDGLNNNVHCNSLNTIAGNISLRPPERADSRQLVNFNGRSIELNEDVFASGGNRTCPIPGPHYTWGNSYRPQPPAPGVVWPNSPSYMNGISAAHTPTQVHGVPRAASHLMHTVLPMNNHHVGSAPAVNPSIWDRQHAYAGELSKASGFHSGSIGNMNLPNNSPQSMEFFSHIFPQVGGNSVELPIPQRNVGLQSHHQRCMVFPGRGQILPMMNSFDSTNERGRSRRNEAASNQADKKQYELDIDRIMRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTDPSLIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNVRTRPGKARTNTQEENHDEGLVISGNGENCSSGDASSSSFLVKDLDQPVP 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19271257 19280228 - Tan0016414.2 Tan06g1439 756143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1439 970 Gene3D - 241 335 IPR012677 -
Tan06g1439 970 MobiDBLite consensus disorder prediction 912 970 - -
Tan06g1439 970 CDD RRM3_MEI2_like 793 878 IPR034454 -
Tan06g1439 970 FunFam Protein MEI2-like 1 335 431 - -
Tan06g1439 970 SUPERFAMILY RNA-binding domain, RBD 248 412 IPR035979 GO:0003676(InterPro)
Tan06g1439 970 SMART rrm1_1 792 868 IPR000504 GO:0003723(InterPro)
Tan06g1439 970 SMART rrm1_1 337 405 IPR000504 GO:0003723(InterPro)
Tan06g1439 970 SMART rrm1_1 252 320 IPR000504 GO:0003723(InterPro)
Tan06g1439 970 Pfam RNA recognition motif 2 790 886 IPR007201 -
Tan06g1439 970 CDD RRM2_MEI2_like 335 405 - -
Tan06g1439 970 FunFam MEI2-like protein 5 isoform 2 240 334 - -
Tan06g1439 970 MobiDBLite consensus disorder prediction 945 963 - -
Tan06g1439 970 Pfam RNA recognition motif 338 403 IPR000504 GO:0003723(InterPro)
Tan06g1439 970 Pfam RNA recognition motif 253 317 IPR000504 GO:0003723(InterPro)
Tan06g1439 970 Gene3D - 336 422 IPR012677 -
Tan06g1439 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 324 IPR000504 GO:0003723(InterPro)
Tan06g1439 970 MobiDBLite consensus disorder prediction 750 772 - -
Tan06g1439 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 409 IPR000504 GO:0003723(InterPro)
Tan06g1439 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 112 941 - GO:0045836(PANTHER)
Tan06g1439 970 SUPERFAMILY RNA-binding domain, RBD 792 877 IPR035979 GO:0003676(InterPro)
Tan06g1439 970 MobiDBLite consensus disorder prediction 756 772 - -
Tan06g1439 970 CDD RRM1_MEI2_like 250 326 IPR034453 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1439 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1438 Tan-Chr6:19271257 Tan06g1439 Tan-Chr6:19271257 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46