Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan06g1482 | ATGGCAGAGCACAACAACAACAAGAAGCAGCCATCATCAGCTGCAGCAGCATCATCCACTCCAACAACAATAACTCCATCACCAGCATCCGCAGATATCAAAGACTTCAGTATCATAATTGCAAACAAAGATGAAAACAAGAAGCAGCAACAATTGGCTCCTAAACGTACCTCTAACAAAGATCGTCACAAGAAAGTCGATGGCCGTGGCCGCAGGATCCGCATGCCTGCTCTCTGCGCCGCCCGTGTTTTCCAATTGACTCGCGAATTGGGCCATAAAACCGATGGTGAGACCATTCAGTGGCTTCTCCAGCAGGCGGAGCCCTCCATCATCGCCGCCACCGGCTCCGGTACCATCCCTGCCTCTGTCCTCCACGCTGCTGGCGTCTCCGTCTCCGACCACGACACCTCCGTCTCCGCTGCCCTAACCCCCAAAATCGACGGCGTCGCCAGGCCCAATTGGGCGATGATGGGAGCTAATTTGAACAGATCTCACATGGCCACGGCCGGATTCTGGCCGTCCTTGGGAGGAATCGGGACGGGGTTCCTGAGCGAGAATTCGGGTTCGATTATGCCGAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCGGTGAATTTCCCGACGGTAATCGGGAATCAGCACCAGCAGCAAATACCGGGGCTGGAGCTAGGGCTTTCGCAGGAAGGGAATAATCTGAGAGGGATGTTGAATCCGCCATCGTATTCGCAAATTTATCACCACATAGGGCAAAATCGCGACTCCTCTGCCGCGCCATTGGAGCAGAATCAAGCTCCTGACAAAGACGATTCTCAAGAATCGAGATGA | 840 | 53.33 | MAEHNNNKKQPSSAAAASSTPTTITPSPASADIKDFSIIIANKDENKKQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASVLHAAGVSVSDHDTSVSAALTPKIDGVARPNWAMMGANLNRSHMATAGFWPSLGGIGTGFLSENSGSIMPKFGFHGFEFQGMNLGSVNFPTVIGNQHQQQIPGLELGLSQEGNNLRGMLNPPSYSQIYHHIGQNRDSSAAPLEQNQAPDKDDSQESR | 279 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 20283738 | 20286536 | - | Tan0020799.1 | Tan06g1482 | 756186 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan06g1482 | 279 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 8 | 255 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
| Tan06g1482 | 279 | MobiDBLite | consensus disorder prediction | 43 | 64 | - | - | |
| Tan06g1482 | 279 | ProSiteProfiles | TCP domain profile. | 59 | 113 | IPR017887 | - | |
| Tan06g1482 | 279 | MobiDBLite | consensus disorder prediction | 256 | 279 | - | - | |
| Tan06g1482 | 279 | Pfam | TCP family transcription factor | 57 | 140 | IPR017887 | - | |
| Tan06g1482 | 279 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Tan06g1482 | 279 | MobiDBLite | consensus disorder prediction | 43 | 71 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan05g0227 | Tan-Chr5:1740266 | Tan06g1482 | Tan-Chr6:20283738 | 1.40E-21 | dispersed | |
| Tan06g1482 | Tan-Chr6:20283738 | Tan07g0081 | Tan-Chr7:2962588 | 1.40E-57 | dispersed | |
| Tan06g1482 | Tan-Chr6:20283738 | Tan07g0080 | Tan-Chr7:2962588 | 1.40E-57 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 27778 | PF03634 | TCP | 1.70E-30 | No_clan | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan06g1482 | - | - | - | 0.0 |