Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1510 ATGTATTTGAGACTCAGGGGCATTGGTAATATGGGGGAAGGATCTATGGATGACATGAAAAGAACTAGAGTTACTTTGCTCGAGTCGCCGTCTTCGAGATTAATTAAGAGGGCACGTACCCCCGGGAGTGGAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCAGGAACAGCGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAGCGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCAACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCCTACCATTTGGTAATCAGTTACTGTCAGCCAGCAATGATGGGAGCTCTTCTTGGATTGGAACGATCAAACCCGAGAACAACGCCGCTCTTTGTGGAAGCAACTCGCTGTTCGACTTTGCTGACAGAAGAAAAAGTATGTTTCCCGGGTCGTTGGCTTGTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGACACTCAGCCATTTCTCAACGTCGGATCCAGCAATGGTGGGAATGTTCAGAAAATGCTCGGAAATGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCATGGGGAGGTTAATAATCTAAGCTCCATGGTACAATCCAACCTCATCCCCCCAGCCCATTTCATACATAGCAACGGTCTTGGCATGGAGAGCGACCTCGTTAATTCTGGTTTGGTCTCGGACGGTAGAAGCGATGGCAGCATTCGATGCTACTCGATGTTCCAGGATGGACCTGATCATGGATCATCCATAGATTTATTCAGGTTTTGA 993 46.93 MYLRLRGIGNMGEGSMDDMKRTRVTLLESPSSRLIKRARTPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDGSSSWIGTIKPENNAALCGSNSLFDFADRRKSMFPGSLACDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKMLGNGSNRFFDSDCALSLLSTPVEHGEVNNLSSMVQSNLIPPAHFIHSNGLGMESDLVNSGLVSDGRSDGSIRCYSMFQDGPDHGSSIDLFRF 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20857181 20860392 + Tan0021019.1 Tan06g1510 756214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1510 330 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 294 IPR044817 GO:0003677(InterPro)
Tan06g1510 330 Pfam SBP domain 50 123 IPR004333 GO:0003677(InterPro)
Tan06g1510 330 Gene3D - 41 111 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan06g1510 330 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677(InterPro)
Tan06g1510 330 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan06g1510 330 FunFam Squamosa promoter-binding-like protein 14 42 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1510 Tan-Chr6:20857181 Tan09g2386 Tan-Chr9:73543696 1.30E-49 dispersed
Tan05g2981 Tan-Chr5:81782478 Tan06g1510 Tan-Chr6:20857181 8.50E-46 wgd
Tan06g1510 Tan-Chr6:20857181 Tan07g0089 Tan-Chr7:3134636 7.20E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27779 PF03110 SBP 7.40E-29 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1510 - - - 0.0