Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1512 ATGGGAAGAGGAAGAGTAGAACTGAAGAGGATAGAGAACAAGATCAACAGACAAGTTACCTTCGCAAAACGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACACTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTCTCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAAGAGTATTTGAAGCTTAAAGCTCGCTATGAAGCACTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGTCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTCAAGCAGATCAGATCAACCAGGACTCAGTACATGTTAGATCAGCTCACTGATCTTCAACGTAAGGAGCATCTTCTTAACGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCCCTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCTCCTGGTGATGCCTTCTTTCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCTATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGA 729 43.35 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20976690 20988809 + Tan0012351.1 Tan06g1512 756216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1512 242 FunFam MADS-box transcription factor 7 13 98 - -
Tan06g1512 242 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan06g1512 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan06g1512 242 Coils Coil 126 146 - -
Tan06g1512 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan06g1512 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g1512 242 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g1512 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g1512 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g1512 242 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g1512 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g1512 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan06g1512 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g1512 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g1512 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan06g1512 242 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1890 Tan-Chr4:61746142 Tan06g1512 Tan-Chr6:20976690 1.20E-41 dispersed
Tan04g1892 Tan-Chr4:61851614 Tan06g1512 Tan-Chr6:20976690 9.20E-68 dispersed
Tan04g1893 Tan-Chr4:61851614 Tan06g1512 Tan-Chr6:20976690 2.00E-67 dispersed
Tan05g2335 Tan-Chr5:74790061 Tan06g1512 Tan-Chr6:20976690 1.20E-61 dispersed
Tan06g1512 Tan-Chr6:20976690 Tan06g2137 Tan-Chr6:70791271 1.00E-56 dispersed
Tan10g2020 Tan-Chr10:64378615 Tan06g1512 Tan-Chr6:20976690 7.50E-07 dispersed
Tan06g1512 Tan-Chr6:20976690 Tan06g1513 Tan-Chr6:21324139 2.10E-19 tandem
Tan05g2978 Tan-Chr5:81763610 Tan06g1512 Tan-Chr6:20976690 5.50E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27780 PF01486 K-box 2.90E-26 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1512 - - - 0.0