Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1519 ATGAGATTTCTGTTGCAGGGAAGGACTGGGATGGAAAGTGTTCCACAACTATCTCCAGCATCGGCTTCTACTTTTGGTTCCTATTCATCTCAAAATCTTGCTTCGGAATGTCAACAGAATTCATTGAGCCCAGGGTCTGTAGACGACAGTTCTGACACTGGCAACCGTGCTATTGGGTCAAATGGCGTGGATGGGCAGTATGAAATATCAGAATTAAAAAGTTCAAACGAATGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGAAGGTTCCCCTGTAGACTACTATGAGATGGCCAATGAGGATCAGTTTTCAGTGCTTCAGCATTCAGAAAATGCTGTCCATGATAATAATTACACATCGTTTGAGATCCAAGATGCTAATGGAAAACATTGCCACTACGCTATGGCACACGAGTTTATGTTTGGTAGTGAAGGAACTCAACAATGGGGTGATGCACTTGGTTCAAGTAAGGCAACAGAACTTGAGTCTCAAGATAGACACTCTCTCCTATGGAATGAAAATGAAAAGCCATCATCATCTTCGAGTAAAAGTACAACTGTAGGCAATGAACATTGCAACTGGGTGCACGGCCGAGGAAAAACTTCTCCTTTGCTAGGAAGCTGCACATCTCCAGAATATTCTTCACCACGAGACAATCATGATGTTAATTCCAACTACCACATACCATTTCTTAAACAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTTCAGAAATTTACAATCCACCAAATTGTACCTGAGCAGGGTTATGCCACGGAGAGTACCAAGGTCATCATTCTTGGATCTTTTCTTTGTGATCCTTCAGAATCTCTATGGGCTTGTATGTTTGGGGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGGTTCTTTGTTGCGAAGCACCTCCACACCTTCCTGGCAAGGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATTCAGAGAGTTTGAATATAGAATGAATGTTTGCAGTCATTGTCAATCACATTCAAGTGGAGCTACGAAGAGTTCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGACTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTAGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTTCTTCCCAAAAGAAAAATAGACACGATCCGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCCTTAAACCCGATTCTCAGTTATGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCGGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGAAGCATCAGCTGGCGCTGTGACTGATCCTAATTCACAAGATCCAGCTGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTTTCATCCCTCACATTTGAACAAGGTGAGCCTTCCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGTAAATTGCATTTCAAAGGGGAACTTCTCTTCCACTGAGGACTATATCCCTCTAAAAGATACATTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAAGCAGTTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTACAACGCTGCTGCATTATCTATACAAAAAAAGTACAGAGGTTGGAAAGGTCGTAAAGAGTTTCTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGAGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTCGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGCTTTCGTAGCGAGATAGGGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGGACTATTGACGAGGCTGTTTCACGAGTGCTATCGATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCTAAGGCTGAACTCAATGGTGCCAGTAGTGAACCCGCAGCATCGACTTCTCTCGGCGACATTTCTGGGATGGAAGACTGTAATCAATATCCTAAGTTTGTATAG 2505 42.44 MRFLLQGRTGMESVPQLSPASASTFGSYSSQNLASECQQNSLSPGSVDDSSDTGNRAIGSNGVDGQYEISELKSSNECEVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSPVDYYEMANEDQFSVLQHSENAVHDNNYTSFEIQDANGKHCHYAMAHEFMFGSEGTQQWGDALGSSKATELESQDRHSLLWNENEKPSSSSSKSTTVGNEHCNWVHGRGKTSPLLGSCTSPEYSSPRDNHDVNSNYHIPFLKQDHGNSFEVDTSLIVAQVQKFTIHQIVPEQGYATESTKVIILGSFLCDPSESLWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVSFCITSGNREPCSEFREFEYRMNVCSHCQSHSSGATKSSEELLLLVRLVQLLLSDSDKVDSEVRSNNLKAGDDQWTSLIEALLVGSETPSSTIDWLLQELLKDKLHLWLSSQKKNRHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSYGVNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPNSQDPAGKTAASIADIHGHKGLAGYLSEVALTTHLSSLTFEQGEPSKGSAEVEAEMTVNCISKGNFSSTEDYIPLKDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAVFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEIGSIDENEDDDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAELNGASSEPAASTSLGDISGMEDCNQYPKFV 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21691763 21725526 + Tan0010155.1 Tan06g1519 756223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1519 834 ProSiteProfiles Ankyrin repeat region circular profile. 498 524 - -
Tan06g1519 834 SUPERFAMILY Ankyrin repeat 467 560 IPR036770 -
Tan06g1519 834 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 30 802 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Tan06g1519 834 ProSiteProfiles Ankyrin repeat profile. 498 530 IPR002110 GO:0005515(InterPro)
Tan06g1519 834 MobiDBLite consensus disorder prediction 184 210 - -
Tan06g1519 834 FunFam Calmodulin-binding transcription activator 2 672 720 - -
Tan06g1519 834 ProSiteProfiles IQ motif profile. 616 644 - -
Tan06g1519 834 Pfam IQ calmodulin-binding motif 675 693 IPR000048 GO:0005515(InterPro)
Tan06g1519 834 Pfam IQ calmodulin-binding motif 698 717 IPR000048 GO:0005515(InterPro)
Tan06g1519 834 SUPERFAMILY E set domains 275 359 IPR014756 -
Tan06g1519 834 Gene3D Immunoglobulins 269 361 IPR013783 -
Tan06g1519 834 CDD IPT 275 359 - -
Tan06g1519 834 SMART ANK_2a 498 527 IPR002110 GO:0005515(InterPro)
Tan06g1519 834 MobiDBLite consensus disorder prediction 11 60 - -
Tan06g1519 834 Gene3D - 362 560 IPR036770 -
Tan06g1519 834 Pfam Ankyrin repeats (3 copies) 471 558 IPR002110 GO:0005515(InterPro)
Tan06g1519 834 MobiDBLite consensus disorder prediction 194 210 - -
Tan06g1519 834 Pfam IPT/TIG domain 275 346 IPR002909 -
Tan06g1519 834 ProSiteProfiles IQ motif profile. 673 702 - -
Tan06g1519 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 724 IPR027417 -
Tan06g1519 834 Gene3D - 673 720 - -
Tan06g1519 834 ProSiteProfiles IQ motif profile. 696 720 - -
Tan06g1519 834 MobiDBLite consensus disorder prediction 1 62 - -
Tan06g1519 834 SMART iq_5 615 637 IPR000048 GO:0005515(InterPro)
Tan06g1519 834 SMART iq_5 695 717 IPR000048 GO:0005515(InterPro)
Tan06g1519 834 SMART iq_5 672 694 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1519 K21596 - - csv:101222798 1351.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1519 Tan-Chr6:21691763 Tan10g1107 Tan-Chr10:10702082 8.80E-92 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43