Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1561 ATGCCGCCTCCTCCCAAACTGAGCCGACAACAACTGCACAGGGACTCGGACGTTGCGGAGATGCCTTCCAATAGCTTGTGGGTCGGCAACTTGTCTATGGATGTCACCGATGCGGATCTCATGAATATGTTTGCGCAGTTTGGTGCGCTTGATAGTGTTACTTCCTATTCTTCCAGGAGCTACGCTTTCATCTTCTTCAAGCACATGGAGGATGCCCAAGCGGCTAAGGAGGCTCTTCAGGGGGTTTTTCTGCGTGGGAGTTCTATCAAGATCGAGTTTGCCAGACCGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGTATTAGCCCAGCTGTTTCAAGGGAACAACTTGAAGAAGAATTTTCCAAATTTGGTAAAATTGATGAATTTAAGTTTTTGCGAGATCGGAATACTGCATTTGTTGAGTATGTTCGATTGGAAGATGCAACACAAGCTTTGAGAATCATGAATGGGAAACGCATTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGGTCACAGCCAATGAGAAGAGATCAGTGGCCTGACCCCAGAGATGGGCATGGGCAGCTTCAGGGCAGAAATGTGGGGATGGGTGATTTCCAATCTGGTTATAAAAGACCACTGCATACTCAATCTTCTGAAGTGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTACCCTCCATCTGTTCAAATTGATGAACAAATGCTCCACAATGCAATGATTTTATTTGGTGAGATAGAGAGAATTACGAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCACGGCGTGCTAAGGAGGGTCTACAAGGACGGCTTTTTAATGATCCTCGGATTTCTATTATGTTTTCAAACAATGATCCGGCACCTGTAAAAGAGCACCCTGGCTTTTATCCTGGTGGTAAAGAGACTAGGCCTGAAATGTTCTTCAATGAGCATCAAATCCGTCCTCCACAAATGGACATGTTAGGACATCCTCACCCGATGGTGCAAAATAAATTCCCTGGACCATTGCCAGCTAGTGGCATTCTTGGACCAAATACAGCAGTAAGACCACCACCCTTTGGTCCTCCACAGGGTATCCCAGGCCCCCCTGAGTTCAATGACTTGGCGACATCTCATGGTTTCCAGGATGCAAATTCAAAAAATATGATGGGTCCAAATTGGAGAAGGCAATCTCCTCCTGCACCTGGGATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCATTGAGGTCCACTCCAAATTCATGGGATGTTTTGGATGTAAACCAATTCCAAAGGGATTCTAAACGATCAAGGATAGATGGTCCAACATCCTTAGACGACGCTTCTTTTCCTCCAAGAAAAATGGATAACCGAGGCATGGGTTTTGATCAGCAATTTGGGGTTGGTCCAATAAGCGATGGAGGTTCTTCTGTTCCATATGCCAATACTCCAGCGAAGACTCATGCTATTCCTATAGGTGCAAGAGCACCGGTTAGTGGTCCTGGTCAGAGCCATGCTGACAATGATTTTATATGGCGTGGAATAATTGCCAAGGGAGGAACGCCTGTTTGTCATGCTCGTTGTGTCCCAATAGGTGAAGGAATAGGAAGTGATCTTCCTGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAGCTCACTAAACATTATGCTGAAGCCACCGGATTCGACATTGTCTTTTTCTTGCCAGATAGTGAGGATGATTTTGCGTCCTATACAGAATTCCTGCGTTACCTAGGTGCAAAAAACCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTGGTTCCTCCTTCGGAGTTTTTGAGAAAAGTCTTGAAAGTTGCGGGTCCAGAACGGCTTTATGGTCTCGTTCTCAAATTTCCTCAGGCGTCTATTAGTGAACCTGCTCACCAACAATCATTTCTACCCATTCCTACTTCTGACTATGGTGAGAGACAACAAGTTTTGTCTTCACAAGCTGAATATGGATCAGCGCCTTCAAAGCAGGAGCAACTTCCTTCAATGGATTATAATAGGGTTTTGCATGAGGAAACGAAGGAGCCCCCGAAACCACTTCTGCCTGCAAGTGAGCCACCAGCAGTTCAGTCATTGCCTCAAGAGTATGTTGCAAACAATAATACGGCTGCAGTCTCACAAGCTGGGTTAGCATTAACACCAGAGCTTATTGCCACCTTAGTTTCTTTACTGCCCGGAAAGACACAGTCATCCAGTTTAGAAAGTGCCAAACAACCAGCCGTCTCACCACAACCTCCAATACCTTCTGTTGTTTCTCATAAAGGGACTACATCTGAGGGATGGATGGTAGGTCATCAATCTTCTGATCCAAGCCAGTCATTTCAGCAAATGGGAAATCATTTTAATCCCCAGGGACAAAGTCTTTCTCAATTTCAGCCTTATCCACCTCTCCCACAAACACCTAACCAGCATGCACCACAGGTCATGGTAACAACCCAAATCCAAGATGCTGCTGTCAGTCTTCCACAGCAGCAGCAGCAGCAGCAGCAGCAGGTACCTAATCCTTACAGGCCGTTGTCTACTTATTCTGCCCCTCCTGAAAATGCACAAGCCTCTGGTTTGCCCTTTGTCAATCCTCAGTATCAGCATGATGTTTCTCAAATTAGCCAGAGAGGTTATGTGTCCGTCAATGGAGTTGATACTTCCGGGTATGGTGCACCAGTTATGCATCAATCAACAAATACTGTGACCTTACCTCATCAAGGTCAGGGTTCTACAACACAGCCACAACCTATTACTCAATTAGCATCTGATAGGGTGAACCCTGAGCTTCCTTATCAGATGCAGCATCTGCAATCTGCAAACCTTGGCACTGGCAATGGAACCGGTGATGTTGAGGCAGGTAAGGACCAGAGGTATCGATCTACACTCCAATTTGCCGCCAATTTACTCCTCCAAATCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCAGGCTGGGGTTCAGGAAATCAATAA 3042 45.96 MPPPPKLSRQQLHRDSDVAEMPSNSLWVGNLSMDVTDADLMNMFAQFGALDSVTSYSSRSYAFIFFKHMEDAQAAKEALQGVFLRGSSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDEFKFLRDRNTAFVEYVRLEDATQALRIMNGKRIGGDQIRVDFLRSQPMRRDQWPDPRDGHGQLQGRNVGMGDFQSGYKRPLHTQSSEVRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIERITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRISIMFSNNDPAPVKEHPGFYPGGKETRPEMFFNEHQIRPPQMDMLGHPHPMVQNKFPGPLPASGILGPNTAVRPPPFGPPQGIPGPPEFNDLATSHGFQDANSKNMMGPNWRRQSPPAPGILSSPATGIRPPPPLRSTPNSWDVLDVNQFQRDSKRSRIDGPTSLDDASFPPRKMDNRGMGFDQQFGVGPISDGGSSVPYANTPAKTHAIPIGARAPVSGPGQSHADNDFIWRGIIAKGGTPVCHARCVPIGEGIGSDLPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTMFLVPPSEFLRKVLKVAGPERLYGLVLKFPQASISEPAHQQSFLPIPTSDYGERQQVLSSQAEYGSAPSKQEQLPSMDYNRVLHEETKEPPKPLLPASEPPAVQSLPQEYVANNNTAAVSQAGLALTPELIATLVSLLPGKTQSSSLESAKQPAVSPQPPIPSVVSHKGTTSEGWMVGHQSSDPSQSFQQMGNHFNPQGQSLSQFQPYPPLPQTPNQHAPQVMVTTQIQDAAVSLPQQQQQQQQQVPNPYRPLSTYSAPPENAQASGLPFVNPQYQHDVSQISQRGYVSVNGVDTSGYGAPVMHQSTNTVTLPHQGQGSTTQPQPITQLASDRVNPELPYQMQHLQSANLGTGNGTGDVEAGKDQRYRSTLQFAANLLLQIQQQQQQQQQQQQAGWGSGNQ 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24343289 24356382 + Tan0016343.1 Tan06g1561 756265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1561 1013 Pfam SPOC domain 512 639 IPR012921 -
Tan06g1561 1013 Gene3D - 6 97 IPR012677 -
Tan06g1561 1013 FunFam Flowering time control protein FPA 16 98 - -
Tan06g1561 1013 CDD RRM_SF 231 293 - -
Tan06g1561 1013 Coils Coil 986 1006 - -
Tan06g1561 1013 SUPERFAMILY RNA-binding domain, RBD 17 98 IPR035979 GO:0003676(InterPro)
Tan06g1561 1013 Pfam RNA recognition motif 103 167 IPR000504 GO:0003723(InterPro)
Tan06g1561 1013 Pfam RNA recognition motif 236 290 IPR000504 GO:0003723(InterPro)
Tan06g1561 1013 Pfam RNA recognition motif 26 90 IPR000504 GO:0003723(InterPro)
Tan06g1561 1013 MobiDBLite consensus disorder prediction 788 818 - -
Tan06g1561 1013 CDD RRM_SF 26 92 - -
Tan06g1561 1013 SMART rrm1_1 25 92 IPR000504 GO:0003723(InterPro)
Tan06g1561 1013 SMART rrm1_1 225 293 IPR000504 GO:0003723(InterPro)
Tan06g1561 1013 SMART rrm1_1 102 169 IPR000504 GO:0003723(InterPro)
Tan06g1561 1013 Gene3D - 210 304 IPR012677 -
Tan06g1561 1013 Gene3D - 98 209 IPR012677 -
Tan06g1561 1013 MobiDBLite consensus disorder prediction 404 463 - -
Tan06g1561 1013 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 173 IPR000504 GO:0003723(InterPro)
Tan06g1561 1013 MobiDBLite consensus disorder prediction 994 1013 - -
Tan06g1561 1013 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 96 IPR000504 GO:0003723(InterPro)
Tan06g1561 1013 SUPERFAMILY RNA-binding domain, RBD 99 297 IPR035979 GO:0003676(InterPro)
Tan06g1561 1013 MobiDBLite consensus disorder prediction 668 687 - -
Tan06g1561 1013 PANTHER RNA RECOGNITION MOTIF-CONTAINING 191 680 - -
Tan06g1561 1013 CDD RRM_SF 103 169 - -
Tan06g1561 1013 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 297 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1561 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1015 Tan-Chr5:8426433 Tan06g1561 Tan-Chr6:24343289 5.30E-66 dispersed
Tan05g1016 Tan-Chr5:8426433 Tan06g1561 Tan-Chr6:24343289 1.20E-53 dispersed
Tan06g1561 Tan-Chr6:24343289 Tan06g1562 Tan-Chr6:24343289 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41