Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1564 ATGAAAATACAGTGCGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCCGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAAGATAAGCCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGATTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACATTGACAAGGTCAAAATGGAACCTCCGAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTTGCAACAAGTTCCTAACTTCACATCACCGTGGGCTGTTGATGACTTTATCCACTTCTCTGATCTCGAGTCCTCTTACAAGCCGAAAGAACATCTAGAGTTTGGAGAACTAGAATGGCTATCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTTCTACACCACACTCAGGTAGTGCATTCGCATGCAGACCGACAAAGTCGAGCACATCGTACAAAAAGCCTAGGATCGAGGTGGTAGATGATGAGGAATTTTTCACCGTTCCTGATCTTGGATGA 714 46.08 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDIDKVKMEPPNPKNPQVPAKMPLQQVPNFTSPWAVDDFIHFSDLESSYKPKEHLEFGELEWLSEMGLFGEQVPQEALAAAEVPELSTPHSGSAFACRPTKSSTSYKKPRIEVVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24504335 24507549 + Tan0003564.1 Tan06g1564 756268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1564 237 CDD Bbox1_BBX-like 56 98 IPR049808 -
Tan06g1564 237 MobiDBLite consensus disorder prediction 204 218 - -
Tan06g1564 237 CDD Bbox1_BBX-like 5 47 IPR049808 -
Tan06g1564 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 Gene3D Classic Zinc Finger 1 119 - -
Tan06g1564 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Tan06g1564 237 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 MobiDBLite consensus disorder prediction 199 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1564 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0919 Tan-Chr1:8736266 Tan06g1564 Tan-Chr6:24504335 6.00E-35 dispersed
Tan02g0764 Tan-Chr2:7230661 Tan06g1564 Tan-Chr6:24504335 2.00E-29 dispersed
Tan03g2053 Tan-Chr3:75499335 Tan06g1564 Tan-Chr6:24504335 3.70E-18 dispersed
Tan05g1250 Tan-Chr5:13163052 Tan06g1564 Tan-Chr6:24504335 1.80E-28 dispersed
Tan06g1564 Tan-Chr6:24504335 Tan09g1648 Tan-Chr9:68139619 4.20E-07 dispersed
Tan06g1564 Tan-Chr6:24504335 Tan02g2035 Tan-Chr2:89736909 8.80E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g2441 . 1 378 Orphan Transcription Factor Family AT5G61850 69.1 7.1e-122 434.9
Tan06g1564 . 1 167 Orphan Transcription Factor Family AT1G06040 67.2 1.0e-58 223.8
Tan01g0919 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 2.0e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27785 PF00643 zf-B_box 1.20E-08 No_clan Tan TF