Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1564 ATGAAAATACAGTGCGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCCGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAAGATAAGCCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGATTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACATTGACAAGGTCAAAATGGAACCTCCGAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTTGCAACAAGTTCCTAACTTCACATCACCGTGGGCTGTTGATGACTTTATCCACTTCTCTGATCTCGAGTCCTCTTACAAGCCGAAAGAACATCTAGAGTTTGGAGAACTAGAATGGCTATCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTTCTACACCACACTCAGGTAGTGCATTCGCATGCAGACCGACAAAGTCGAGCACATCGTACAAAAAGCCTAGGATCGAGGTGGTAGATGATGAGGAATTTTTCACCGTTCCTGATCTTGGATGA 714 46.08 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDIDKVKMEPPNPKNPQVPAKMPLQQVPNFTSPWAVDDFIHFSDLESSYKPKEHLEFGELEWLSEMGLFGEQVPQEALAAAEVPELSTPHSGSAFACRPTKSSTSYKKPRIEVVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24504335 24507549 + Tan0003564.1 Tan06g1564 756268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1564 237 CDD Bbox1_BBX-like 56 98 IPR049808 -
Tan06g1564 237 MobiDBLite consensus disorder prediction 204 218 - -
Tan06g1564 237 CDD Bbox1_BBX-like 5 47 IPR049808 -
Tan06g1564 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 Gene3D Classic Zinc Finger 1 119 - -
Tan06g1564 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Tan06g1564 237 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
Tan06g1564 237 MobiDBLite consensus disorder prediction 199 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0919 Tan-Chr1:8736266 Tan06g1564 Tan-Chr6:24504335 6.00E-35 dispersed
Tan02g0764 Tan-Chr2:7230661 Tan06g1564 Tan-Chr6:24504335 2.00E-29 dispersed
Tan03g2053 Tan-Chr3:75499335 Tan06g1564 Tan-Chr6:24504335 3.70E-18 dispersed
Tan05g1250 Tan-Chr5:13163052 Tan06g1564 Tan-Chr6:24504335 1.80E-28 dispersed
Tan06g1564 Tan-Chr6:24504335 Tan09g1648 Tan-Chr9:68139619 4.20E-07 dispersed
Tan06g1564 Tan-Chr6:24504335 Tan02g2035 Tan-Chr2:89736909 8.80E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27785 PF00643 zf-B_box 1.20E-08 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1564 - - - 0.0