Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan06g1569 | ATGGCGGACGAAGTTCAGAATGATCTCAACGATCAGGTGGCAGATATTGCCCCTTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTCGTACTTCAGGATCCGGCTGATGAATCTGTTGACAAGTTAGCAGAGAAAACTGAAAGTTTGTCAGTTTCTGATGGTTTAGAGACTACTACGTTTTCTGGACTTAAAAAGAAGAAGAAAAAGCCAGTAGAGGCCAGCTCCTTGAATGACGATGGTGCAGATGCCATAGAGGATTTGGAAGATCAAGCTGGGGAGAATGAGGAACAAGAGGGAATTGTTCTGCAGTATCGGTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGCTTCTTGGACGGGTATTCAACATTCTTAGAGAGAATAATCCAGAGCTTGCCGGCGATAGGCGTAGAACAGTTATGAGGCCTCCACAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCATCGGCAGCCAGACCATGTTATGGCTTTCTTATTGGCTGAACTGGGAACCAGTGGATCTCTTGATGGACAACAGAGATTAGTGGTTAAGGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAATCGACTCTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCAATTAAAGCTGGTTTTGTTGCTCGTGTTGGCCGGAGGAACACTGGGACATGA | 813 | 44.16 | MADEVQNDLNDQVADIAPFDPTKKKKKKKVVLQDPADESVDKLAEKTESLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADAIEDLEDQAGENEEQEGIVLQYRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 24650086 | 24666490 | - | Tan0018538.1 | Tan06g1569 | 756273 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan06g1569 | 270 | MobiDBLite | consensus disorder prediction | 30 | 48 | - | - | |
| Tan06g1569 | 270 | MobiDBLite | consensus disorder prediction | 61 | 76 | - | - | |
| Tan06g1569 | 270 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 219 | 254 | IPR016190 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Tan06g1569 | 270 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 25 | 256 | IPR045196 | GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER) | |
| Tan06g1569 | 270 | Pfam | Domain found in IF2B/IF5 | 139 | 248 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Tan06g1569 | 270 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 115 | 222 | IPR016189 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Tan06g1569 | 270 | MobiDBLite | consensus disorder prediction | 1 | 82 | - | - | |
| Tan06g1569 | 270 | FunFam | Eukaryotic translation initiation factor 2 subunit | 113 | 255 | - | - | |
| Tan06g1569 | 270 | Gene3D | - | 113 | 255 | - | - | |
| Tan06g1569 | 270 | SMART | eIF2Bneu4 | 140 | 249 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan06g1569 | Tan-Chr6:24650086 | Tan08g2446 | Tan-Chr8:75610801 | 8.50E-145 | dispersed | |
| Tan06g1569 | Tan-Chr6:24650086 | Tan06g1570 | Tan-Chr6:24650086 | 2.30E-134 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan06g1569 | K03238 | - | csv:101220978 | 514.998 |