Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1570 ATGGCGGACGAAGTTCAGAATGATCTCAACGATCAGGTGGCAGATATTGCCCCTTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTCGTACTTCAGGATCCGGCTGATGAATCTGTTGACAAGTTAGCAGAGAAAACTGAAAGTTTGTCAGTTTCTGATGGTTTAGAGACTACTACGTTTTCTGGACTTAAAAAGAAGAAGAAAAAGCCAGTAGAGGCCAGCTCCTTGAATGACGATGGTGCAGATGCCATAGAGGATTTGGAAGATCAAGCTGGGGAGAATGAGGAACAAGAGGGAATTGTTCTGCAGTATCGGTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGCTTCTTGGACGGGTATTCAACATTCTTAGAGAGAATAATCCAGAGCTTGCCGGCGATAGGCGTAGAACAGTTATGAGGCCTCCACAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCATCGGCAGCCAGACCATGTTATGGCTTTCTTATTGGCTGAACTGGGAACCAGTGGATCTCTTGATGGACAACAGAGATTAGTGGTTAAGGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAATCGACTCTTCTTTCTCAGATGCGAGAAGGTAAGGGCCCTTTTTTTTGTGTGTTTTCTAGTTCTCGATATGGTAATTTGGGGGAAGTGA 795 43.27 MADEVQNDLNDQVADIAPFDPTKKKKKKKVVLQDPADESVDKLAEKTESLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADAIEDLEDQAGENEEQEGIVLQYRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKVRALFFVCFLVLDMVIWGK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24650086 24666490 - Tan0018538.2 Tan06g1570 756274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1570 264 MobiDBLite consensus disorder prediction 30 48 - -
Tan06g1570 264 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 219 247 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan06g1570 264 MobiDBLite consensus disorder prediction 61 76 - -
Tan06g1570 264 FunFam Eukaryotic translation initiation factor 2 subunit 113 252 - -
Tan06g1570 264 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 115 222 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan06g1570 264 SMART eIF2Bneu4 140 256 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan06g1570 264 Gene3D - 113 250 - -
Tan06g1570 264 MobiDBLite consensus disorder prediction 1 82 - -
Tan06g1570 264 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 25 245 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)
Tan06g1570 264 Pfam Domain found in IF2B/IF5 139 245 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1570 Tan-Chr6:24650086 Tan08g2446 Tan-Chr8:75610801 4.40E-130 dispersed
Tan06g1569 Tan-Chr6:24650086 Tan06g1570 Tan-Chr6:24650086 2.30E-134 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1570 K03238 - csv:101220978 465.307