Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1586 ATGGCTTCCAGTAATGGCGCTTCGCCCCCCACCGGCTCCGGTCTGATCGTGAGTTTCGGTGAGATGTTGATCGATTTCGTCCCGACGGTTTCCGGCGTTTCTCTGGCGGATGCGCCTGGATTTCTCAAGGCTCCCGGTGGCGCTCCGGCGAACGTCGCGATCGCTGTCAGTCGCCTTGGCGGCCGCGCTGCCTTCGTCGGAAAGCTCGGCGACGATGAGTTTGGCCAGATGTTGGCCAAAATCGTGAGGGAGCACGGCGTCGACGACAAAGGAATTTGCTTCGATACAGGCGCTAGAACCGCCTTGGCCTTCGTCACTCTACGCGCTGACGGTGAGCGTGAGTTTATGTTCTACCGGAACCCTAGCGCCGATATGCTTCTTAAGCCCAATGAATTGAATCTCGACCTCATCAAATCCGCCAAAATCTTTCACTATGGATCGATAAGCTTGATCGTGGAGCCGTGCAGATCTGCCCATATGAAGGCAATGGAGGAGGCCAAGAAAGCAGGTGCTTTACTTTCATACGATCCAAATCTGAGGTTGCCTTTGTGGCCCTCAGCAGATGAGGCTCGTGAACAGATCAAGAGCATTTGGAACAAGGCCGACATCATCAAGGTCAGCGATGATGAGCTCAAATTCCTCACCAAATCCGAAAAGATCGATGACGAAACTGCCATGACACTCTGGCATGATGGCTTGAAGCTCCTCCTCCTCACTCTTGGCGAGCATGGCTGCAAATACTACACCAAGAAATTCCGAGGCTCGGTGGATCCTTTCAAGGTCAAAACCGTGGACACAACCGGAGCTGGCGACTCATTCGTTGGCGCTCTTCTTTGCAAGATTGTCGACGATCAATCTGTTCTCGAGGATGAGAAGAGGCTGAGGGAGATCTTGAGATATGCAAACGCATGTGGAGCCATTACAACAACCAAGAAGGGAGCAATCCCAGCTCTTCCATCACCGGCTGACGTGGAAGCTTTGTTCAAGGCTTCTAACTAG 999 53.05 MASSNGASPPTGSGLIVSFGEMLIDFVPTVSGVSLADAPGFLKAPGGAPANVAIAVSRLGGRAAFVGKLGDDEFGQMLAKIVREHGVDDKGICFDTGARTALAFVTLRADGEREFMFYRNPSADMLLKPNELNLDLIKSAKIFHYGSISLIVEPCRSAHMKAMEEAKKAGALLSYDPNLRLPLWPSADEAREQIKSIWNKADIIKVSDDELKFLTKSEKIDDETAMTLWHDGLKLLLLTLGEHGCKYYTKKFRGSVDPFKVKTVDTTGAGDSFVGALLCKIVDDQSVLEDEKRLREILRYANACGAITTTKKGAIPALPSPADVEALFKASN 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25406435 25410696 - Tan0020467.1 Tan06g1586 756290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1586 332 FunFam Probable fructokinase-2 13 332 - -
Tan06g1586 332 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 265 278 IPR002173 GO:0016301(InterPro)
Tan06g1586 332 PANTHER HEXOKINASE FAMILY MEMBER 15 325 IPR050306 GO:0005829(PANTHER)|GO:0006000(PANTHER)|GO:0008865(PANTHER)
Tan06g1586 332 Gene3D - 14 332 IPR029056 -
Tan06g1586 332 PRINTS Ribokinase signature 41 60 IPR002139 GO:0016301(InterPro)
Tan06g1586 332 PRINTS Ribokinase signature 196 211 IPR002139 GO:0016301(InterPro)
Tan06g1586 332 PRINTS Ribokinase signature 236 247 IPR002139 GO:0016301(InterPro)
Tan06g1586 332 SUPERFAMILY Ribokinase-like 16 328 IPR029056 -
Tan06g1586 332 CDD bac_FRK 15 315 - -
Tan06g1586 332 Pfam pfkB family carbohydrate kinase 15 319 IPR011611 -
Tan06g1586 332 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 46 70 IPR002173 GO:0016301(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1586 K00847 - - csv:101213366 542.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1586 Tan-Chr6:25406435 Tan07g0243 Tan-Chr7:5316468 4.30E-106 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1238 Blo01g00197 Blo12g00260 Bda03g00976 . Bpe04g00903 . . . Cmo08g00204 Cmo17g00583 . . . . . . . . . . . . . . Cla06g00083 Cam06g0141 Cec06g0090 Cco06g0087 Clacu06g0090 Cmu06g0088 Cre06g0861 . . . . . . . . . . . . Bpe05g00976 . . . Sed09g0418 . . . Cma17g00603 Car08g00178 Car17g00570 Cpe12g00513 Cpe17g01091 Bhi12g02522 Tan06g1586 Cmetu11g0190 . Hepe03g1051 . . . . . . . . . . . . Cme11g02461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004086 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 2 4 1 2 44