Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g1608 | ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGATGATTGCGATTTATACAGCGGCGATATGGACATGGGTATGGACTATTACAGCGATGACGACGATCCTGAAGCTGAGGACTTCGTCGACGACGATACAGATGATTACTTCGAGTCTCATCGACGCGAGCAAAATTATACCATACTAAATGAATTTGATATAAGACAACGCCAAGAGGACGACGTTACGAGAATTTCTTCTGTACTTTCTATACCACGTGTAGCTTCAACTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCTAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAGCGTACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCACCTGTGGTCATCCTTTCTGTGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGGTTAATTCGTTGGCCTCAAATGAAGACGGAGAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGCTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTATCTTGCCTTTGCACATATGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGGTACCGTGGAAAAATGGATTTTAAAGAACAGTGCGGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCATATGACTTGCACACCTCCGTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGTAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTAACAGATTTGCATCAAATGCAGAATGTGCATATTGAAAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTCTGAAATGGACTTATGCATATGGATATTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAACTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACCCGAAATTACTTTGAAAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCACGGAGCAAGCAGCGGCCCAACGAGCTCAAAAAACACAGCAGGAAGTAGTAAAGCAGGGAGAAGCGGACGGGGTAAGGGAATTAGTCGAACCAGCAGCAGTTTGACCAGAAGCGGCGACAATGCCACTCATTGGTCGTGTGAACACTGTACCTTTGTAAACACTAAAACTACTACCGTATGCGAGATGTGCCATCAACGCCATTGA | 1764 | 44.05 | MDSEDDLHYSTDDDCDLYSGDMDMGMDYYSDDDDPEAEDFVDDDTDDYFESHRREQNYTILNEFDIRQRQEDDVTRISSVLSIPRVASTVLLRHFNWSVTKVHDEWFADEARVRKLVGLLEAPVVHVLNARERTCGICFESYPNSRIKSATCGHPFCASCWEGYISTSINDGPGCLMLRCPDPSCGAVVDQDMVNSLASNEDGEKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWNCTEEAHRPVDCGTVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALTDLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGPTSSKNTAGSSKAGRSGRGKGISRTSSSLTRSGDNATHWSCEHCTFVNTKTTTVCEMCHQRH | 587 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26454883 | 26466503 | + | Tan0016485.1 | Tan06g1608 | 756312 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g1608 | 587 | MobiDBLite | consensus disorder prediction | 517 | 560 | - | - | |
Tan06g1608 | 587 | SUPERFAMILY | RING/U-box | 132 | 213 | - | - | |
Tan06g1608 | 587 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 219 | IPR013083 | - | |
Tan06g1608 | 587 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 102 | 391 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Tan06g1608 | 587 | CDD | Rcat_RBR_ARI7-like | 289 | 343 | - | - | |
Tan06g1608 | 587 | Gene3D | - | 262 | 517 | - | - | |
Tan06g1608 | 587 | MobiDBLite | consensus disorder prediction | 545 | 560 | - | - | |
Tan06g1608 | 587 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 68 | 107 | IPR048962 | - | |
Tan06g1608 | 587 | CDD | BRcat_RBR_ANKIB1 | 211 | 275 | - | - | |
Tan06g1608 | 587 | ProSitePatterns | Zinc finger RanBP2-type signature. | 564 | 583 | IPR001876 | - | |
Tan06g1608 | 587 | Pfam | IBR domain | 288 | 328 | - | - | |
Tan06g1608 | 587 | SMART | ibrneu5 | 204 | 266 | IPR002867 | GO:0008270(InterPro) | |
Tan06g1608 | 587 | SMART | ibrneu5 | 270 | 340 | IPR002867 | GO:0008270(InterPro) | |
Tan06g1608 | 587 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 179 | IPR001841 | - | |
Tan06g1608 | 587 | Coils | Coil | 352 | 372 | - | - | |
Tan06g1608 | 587 | FunFam | RBR-type E3 ubiquitin transferase | 267 | 517 | - | - | |
Tan06g1608 | 587 | FunFam | RBR-type E3 ubiquitin transferase | 129 | 218 | - | - | |
Tan06g1608 | 587 | SUPERFAMILY | RING/U-box | 285 | 333 | - | - | |
Tan06g1608 | 587 | Pfam | IBR domain, a half RING-finger domain | 204 | 266 | IPR002867 | GO:0008270(InterPro) | |
Tan06g1608 | 587 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 556 | 587 | IPR001876 | - | |
Tan06g1608 | 587 | SMART | zf_4 | 562 | 586 | IPR001876 | - | |
Tan06g1608 | 587 | SUPERFAMILY | RING/U-box | 204 | 273 | - | - | |
Tan06g1608 | 587 | Pfam | Ariadne domain | 353 | 516 | IPR045840 | - | |
Tan06g1608 | 587 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Tan06g1608 | 587 | SUPERFAMILY | Ran binding protein zinc finger-like | 560 | 585 | IPR036443 | - | |
Tan06g1608 | 587 | CDD | RING-HC_ARI6-like | 132 | 193 | - | - | |
Tan06g1608 | 587 | MobiDBLite | consensus disorder prediction | 517 | 538 | - | - | |
Tan06g1608 | 587 | ProSiteProfiles | TRIAD supradomain profile. | 131 | 344 | IPR044066 | - | |
Tan06g1608 | 587 | Gene3D | - | 557 | 587 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g1346 | Tan-Chr5:17761306 | Tan06g1608 | Tan-Chr6:26454883 | 5.70E-50 | dispersed | |
Tan05g1347 | Tan-Chr5:17761306 | Tan06g1608 | Tan-Chr6:26454883 | 5.70E-50 | dispersed | |
Tan06g1608 | Tan-Chr6:26454883 | Tan08g1189 | Tan-Chr8:29875463 | 5.70E-186 | dispersed | |
Tan06g1608 | Tan-Chr6:26454883 | Tan06g1609 | Tan-Chr6:26454883 | 1.40E-301 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g1608 | K11968 | - | csv:101223037 | 1097.03 |