Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1609 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGATGATTGCGATTTATACAGCGGCGATATGGACATGGGTATGGACTATTACAGCGATGACGACGATCCTGAAGCTGAGGACTTCGTCGACGACGATACAGATGATTACTTCGAGTCTCATCGACGCGAGCAAAATTATACCATACTAAATGAATTTGATATAAGACAACGCCAAGAGGACGACGTTACGAGAATTTCTTCTGTACTTTCTATACCACGTGTAGCTTCAACTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCTAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAGCGTACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCACCTGTGGTCATCCTTTCTGTGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGGTTAATTCGTTGGCCTCAAATGAAGACGGAGAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGCTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTATCTTGCCTTTGCACATATGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGGTACCGTGGAAAAATGGATTTTAAAGAACAGTGCGGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCATATGACTTGCACACCTCCGTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGTAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTAACAGATTTGCATCAAATGCAGAATGTGCATATTGAAAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTCTGAAATGGACTTATGCATATGGATATTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAACTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAGCTTGCTGGTCTGACCAGGTAA 1494 43.31 MDSEDDLHYSTDDDCDLYSGDMDMGMDYYSDDDDPEAEDFVDDDTDDYFESHRREQNYTILNEFDIRQRQEDDVTRISSVLSIPRVASTVLLRHFNWSVTKVHDEWFADEARVRKLVGLLEAPVVHVLNARERTCGICFESYPNSRIKSATCGHPFCASCWEGYISTSINDGPGCLMLRCPDPSCGAVVDQDMVNSLASNEDGEKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWNCTEEAHRPVDCGTVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALTDLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTR 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26454883 26466503 + Tan0016485.2 Tan06g1609 756313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1609 497 SMART ibrneu5 204 266 IPR002867 GO:0008270(InterPro)
Tan06g1609 497 SMART ibrneu5 270 340 IPR002867 GO:0008270(InterPro)
Tan06g1609 497 FunFam RBR-type E3 ubiquitin transferase 267 497 - -
Tan06g1609 497 SUPERFAMILY RING/U-box 285 333 - -
Tan06g1609 497 ProSiteProfiles Zinc finger RING-type profile. 135 179 IPR001841 -
Tan06g1609 497 Coils Coil 352 372 - -
Tan06g1609 497 Pfam IBR domain 288 328 - -
Tan06g1609 497 CDD Rcat_RBR_ARI7-like 289 343 - -
Tan06g1609 497 CDD BRcat_RBR_ANKIB1 211 275 - -
Tan06g1609 497 MobiDBLite consensus disorder prediction 1 42 - -
Tan06g1609 497 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 GO:0008270(InterPro)
Tan06g1609 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 216 IPR013083 -
Tan06g1609 497 SUPERFAMILY RING/U-box 204 273 - -
Tan06g1609 497 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 101 393 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Tan06g1609 497 Gene3D - 262 496 - -
Tan06g1609 497 CDD RING-HC_ARI6-like 132 193 - -
Tan06g1609 497 FunFam RBR-type E3 ubiquitin transferase 129 218 - -
Tan06g1609 497 SUPERFAMILY RING/U-box 132 213 - -
Tan06g1609 497 ProSiteProfiles TRIAD supradomain profile. 131 344 IPR044066 -
Tan06g1609 497 Pfam Ariadne domain 353 476 IPR045840 -
Tan06g1609 497 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 68 107 IPR048962 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1609 Tan-Chr6:26454883 Tan08g1189 Tan-Chr8:29875463 1.50E-158 dispersed
Tan06g1608 Tan-Chr6:26454883 Tan06g1609 Tan-Chr6:26454883 1.40E-301 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1609 K11968 - csv:101223037 949.888