Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1609 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGATGATTGCGATTTATACAGCGGCGATATGGACATGGGTATGGACTATTACAGCGATGACGACGATCCTGAAGCTGAGGACTTCGTCGACGACGATACAGATGATTACTTCGAGTCTCATCGACGCGAGCAAAATTATACCATACTAAATGAATTTGATATAAGACAACGCCAAGAGGACGACGTTACGAGAATTTCTTCTGTACTTTCTATACCACGTGTAGCTTCAACTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCTAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAGCGTACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCACCTGTGGTCATCCTTTCTGTGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGGTTAATTCGTTGGCCTCAAATGAAGACGGAGAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGCTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTATCTTGCCTTTGCACATATGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGGTACCGTGGAAAAATGGATTTTAAAGAACAGTGCGGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCATATGACTTGCACACCTCCGTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGTAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTAACAGATTTGCATCAAATGCAGAATGTGCATATTGAAAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTCTGAAATGGACTTATGCATATGGATATTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAACTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAGCTTGCTGGTCTGACCAGGTAA 1494 43.31 MDSEDDLHYSTDDDCDLYSGDMDMGMDYYSDDDDPEAEDFVDDDTDDYFESHRREQNYTILNEFDIRQRQEDDVTRISSVLSIPRVASTVLLRHFNWSVTKVHDEWFADEARVRKLVGLLEAPVVHVLNARERTCGICFESYPNSRIKSATCGHPFCASCWEGYISTSINDGPGCLMLRCPDPSCGAVVDQDMVNSLASNEDGEKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWNCTEEAHRPVDCGTVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALTDLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTR 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26454883 26466503 + Tan0016485.2 Tan06g1609 756313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1609 497 SMART ibrneu5 204 266 IPR002867 GO:0008270(InterPro)
Tan06g1609 497 SMART ibrneu5 270 340 IPR002867 GO:0008270(InterPro)
Tan06g1609 497 FunFam RBR-type E3 ubiquitin transferase 267 497 - -
Tan06g1609 497 SUPERFAMILY RING/U-box 285 333 - -
Tan06g1609 497 ProSiteProfiles Zinc finger RING-type profile. 135 179 IPR001841 -
Tan06g1609 497 Coils Coil 352 372 - -
Tan06g1609 497 Pfam IBR domain 288 328 - -
Tan06g1609 497 CDD Rcat_RBR_ARI7-like 289 343 - -
Tan06g1609 497 CDD BRcat_RBR_ANKIB1 211 275 - -
Tan06g1609 497 MobiDBLite consensus disorder prediction 1 42 - -
Tan06g1609 497 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 GO:0008270(InterPro)
Tan06g1609 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 216 IPR013083 -
Tan06g1609 497 SUPERFAMILY RING/U-box 204 273 - -
Tan06g1609 497 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 101 393 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Tan06g1609 497 Gene3D - 262 496 - -
Tan06g1609 497 CDD RING-HC_ARI6-like 132 193 - -
Tan06g1609 497 FunFam RBR-type E3 ubiquitin transferase 129 218 - -
Tan06g1609 497 SUPERFAMILY RING/U-box 132 213 - -
Tan06g1609 497 ProSiteProfiles TRIAD supradomain profile. 131 344 IPR044066 -
Tan06g1609 497 Pfam Ariadne domain 353 476 IPR045840 -
Tan06g1609 497 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 68 107 IPR048962 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1609 K11968 - - csv:101223037 949.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1609 Tan-Chr6:26454883 Tan08g1189 Tan-Chr8:29875463 1.50E-158 dispersed
Tan06g1608 Tan-Chr6:26454883 Tan06g1609 Tan-Chr6:26454883 1.40E-301 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g1343 . 164 589 ARIADNE family AT4G34370 71.7 1.9e-183 639.4
Tan05g1345 . 164 593 ARIADNE family AT4G34370 71.1 4.8e-182 634.8
Tan05g1346 . 164 543 ARIADNE family AT4G34370 77.1 4.2e-178 621.7
Tan05g1347 . 164 543 ARIADNE family AT4G34370 77.1 4.2e-178 621.7
Tan05g1344 . 164 542 ARIADNE family AT4G34370 77.0 2.1e-177 619.4
Tan05g1345 . 58 544 ARIADNE family AT2G16090 76.7 2.0e-224 775.8
Tan05g1346 . 58 544 ARIADNE family AT2G16090 76.7 2.0e-224 775.8
Tan05g1347 . 58 544 ARIADNE family AT2G16090 76.7 2.0e-224 775.8
Tan05g1343 . 58 542 ARIADNE family AT2G16090 76.8 5.7e-224 774.2
Tan05g1344 . 58 542 ARIADNE family AT2G16090 76.8 5.7e-224 774.2
Tan05g1343 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1345 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1346 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1347 . 38 543 ARIADNE family AT3G27710 61.3 1.6e-182 636.7
Tan05g1344 . 38 522 ARIADNE family AT3G27710 62.7 3.5e-182 635.6
Tan05g1343 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1344 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1345 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1346 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan05g1347 . 44 522 ARIADNE family AT3G27720 54.5 4.5e-144 508.8
Tan06g1608 . 56 530 ARIADNE family AT1G05890 74.5 1.2e-220 763.5
Tan06g1609 . 56 496 ARIADNE family AT1G05890 75.3 1.6e-207 719.9
Tan08g1189 . 4 348 ARIADNE family AT1G05890 70.1 1.4e-155 547.4
Tan06g1608 . 53 584 ARIADNE family AT1G65430 71.2 3.5e-241 831.6
Tan06g1609 . 53 496 ARIADNE family AT1G65430 75.9 6.0e-217 751.1
Tan08g1189 . 3 403 ARIADNE family AT1G65430 73.3 1.6e-185 646.7
Tan06g1608 . 53 449 ARIADNE family AT2G31780 57.6 5.9e-143 505.0
Tan06g1609 . 53 449 ARIADNE family AT2G31780 57.6 5.9e-143 505.0
Tan08g1189 . 4 267 ARIADNE family AT2G31780 54.2 8.3e-89 325.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72