Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1742 ATGGAGTTGGATGGCATCGAAGGCGTGCCATCCATGGATGTGATAGACGAGGAGGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGGATCAACAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTCTGCACCAATTCTATGTATCCTCCAATTCATCAGTGTCCCAATGGGCATACCCTCTGTTCTTCATGTAAAACGAGGGTAGACAACCGTTGCCCAACGTGCAGACAAGAGCTCGGCGATATCAGATGTCTAGCATTAGAAAAAATAGCCGAATCACTTAAACTGGCTTGTAAATTCTGCACATTTGGGTGCCCAGAGATATTGCCTTACTACAGTAAACTCAAACATGAATCTGCCTGTTACTTTAGACCTTATACCTGCCCTTATGCTGGATCAGACTGCCCAGTAGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGGGACGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTACATGGATGCTAACTGTTTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCGTTTCAGCTGGGTATGGCACCGGTTTACATGGCATTTCTCCGATTCATGGGCGACGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGGTTGGTGGGAATGGTAGGAAGCTCATATGGGAGGGCAACCCTCGAAGTATCCGGGACAACCACAAGAAAGTCAGAGACAGCCATGATGGCCTCATTATACAACGAAACATGGCGCTCTTCTTTTCGGGGGGAGAAAGGAAAGAGCTGAAGCTGCGTATCACAGGACGAATTTGGAAAGAACAAAATAAACAGTAA 915 46.01 MELDGIEGVPSMDVIDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34756841 34760893 + Tan0007060.1 Tan06g1742 756446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1742 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 96 IPR013083 -
Tan06g1742 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515(InterPro)
Tan06g1742 304 SUPERFAMILY TRAF domain-like 106 298 - -
Tan06g1742 304 CDD RING-HC_SIAHs 51 89 - -
Tan06g1742 304 Pfam Sina, TRAF-like domain 197 294 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Tan06g1742 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270(InterPro)
Tan06g1742 304 SUPERFAMILY RING/U-box 47 93 - -
Tan06g1742 304 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 53 88 IPR049548 -
Tan06g1742 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Tan06g1742 304 Pfam Sina, zinc finger 102 177 - -
Tan06g1742 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 160 IPR013083 -
Tan06g1742 304 CDD Sina 167 295 - -
Tan06g1742 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
Tan06g1742 304 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Tan06g1742 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 296 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0099 Tan-Chr1:1008354 Tan06g1742 Tan-Chr6:34756841 5.20E-144 dispersed
Tan01g0100 Tan-Chr1:1008354 Tan06g1742 Tan-Chr6:34756841 1.90E-127 dispersed
Tan06g1742 Tan-Chr6:34756841 Tan11g1557 Tan-Chr11:14397708 3.00E-130 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1742 K04506 - csv:101209363 642.499