Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1746 ATGACGCTTTACGAACAGAATCCGGAGGGGTCTCGCAAAGGTTTGGAAGGTGAGGATCTGTATGAGAAGCTGTGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTCTCAATGGAGAAAGGGTTTTTTACTTCCCTCAGGGTCACATGGAACAACTGGAAGAGTCAACAAATCAGGAGCTTAATCACCAAATCCCTCATTATGATCTTCCTCCTAAGATCCTCTGTCGTGTCGTTAACATTCGTTTGTTGGCTGAAAAGGAAACAGATGAGGTCTATGCTCAAATCACTTTACACCCAGAAGCTGATCAAAGTGAGCCGCAAAGCCCTGATCCAGAGCCGCCTGAGCGTACAAGGCAAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGCGGTTTCTCAGTTCTTAGAAAACATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCTACCCCAACTCAGGAGTTAGCTGCCAAAGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCACGCAGGCATTTGCTTACTACTGGGTGGAGTACATTCGTTACATCGAAACGACTGGTTGCTGGGGATGCCTTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTTGGGGTTCGACGACAGGCTCGGCAGCAGAGTTTGATGCCTTCCTCTGTGATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCCACCGCATCTCATGCTGTTCGTACGCAGACATTTTTCGTTGTCTATTACAAACCGAGAACTAGCCAATTCATCATCGGCTTAAACAAGTACTTGGAAACGGTTAAAAATGGGTTTGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCACCAGAGAGAAGGTTCACTGGTACTATTGTTGGTGTTGGAGATATATCTCCGCAATGGTCAGATTCCAAATGGCGATCACTGAAGATTCAATGGGATGAACCAGCTGCGATTCAGAGGCCCGAGCGAGTGTCCCCATGGGAGATCGAACCATTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCCTCCTTAAAGAGTAAAAGGGCACGACCCATCGAGATTCCTCCTGAAATTAATTCCAGTTCGGCTCCTTCGGGCTTTTGGCTTCACGGATCAACAATTCCTCATGAGATACCCCAACTAAGTGGCACAAATGAAGCTCAAAGCAGCGATAACCAGGCTGTCTGGTCTCTCGGGCAGCGAAAACTCGACAGCAATGCCGATAGCAGTCGCAGCCACTGTAATCCAATGGCACATGTAGATGGCATTTGGCCTTCTCCTCCTCTCCTTAATATTTCCCTTAAGCTTTACCCAGATTCAACATGTGAGAGAGAACTCGTTCCAAAACAGCCTCTTCCCTCTCCTTATTCTCCATCTGTTACTTCAAAGCCTAGCAGCGACCTCATTCAACATGATCAATTGGAGAAAGGGAATAAACCCGACGTTTCTCTCGGCTGTCGAATATTTGGAATCGATTTGAAAAATAACTCTAGCATTGTCTCTTCCTTGGGGAAAAAACCATGTTGTCCAACTACGGTGGCCAATGGTGCTCAAGATCTGGTAGCTGCCGCTGGTGCGACATCTCAAGCCGATACTGGAAACCTCTCACAGCCTTCAAAGGAGCAGCTGCAAGTTGCTTCGGAGCTGTCGACGAAGGGAACGCAAACAAAGCACGTTTCCAATCCATCGTCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTATAGGTCGAGCGGTCGACTTGACGACACTTGAAGGGTATGAAGATCTCATAGACGAGCTTGAGAACGTGTTTGAAATAAAAGGAGAACTTCGTGAAATGAACAAATGGTCTGTCATTTTCACGGACGATGAAAACGACATGATGCTCGTGGGGGACGATCCATGGCCTGAGTTCTGTAAGATGGTGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGTAGTAAAAGCAAGCTTGTTTCCCCATCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACTGAATCCTAA 2094 46.13 MTLYEQNPEGSRKGLEGEDLYEKLWKACAGPLVEVPLNGERVFYFPQGHMEQLEESTNQELNHQIPHYDLPPKILCRVVNIRLLAEKETDEVYAQITLHPEADQSEPQSPDPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTFFVVYYKPRTSQFIIGLNKYLETVKNGFEVGMRFKMRFEGEESPERRFTGTIVGVGDISPQWSDSKWRSLKIQWDEPAAIQRPERVSPWEIEPFVPSASLNFTHPSLKSKRARPIEIPPEINSSSAPSGFWLHGSTIPHEIPQLSGTNEAQSSDNQAVWSLGQRKLDSNADSSRSHCNPMAHVDGIWPSPPLLNISLKLYPDSTCERELVPKQPLPSPYSPSVTSKPSSDLIQHDQLEKGNKPDVSLGCRIFGIDLKNNSSIVSSLGKKPCCPTTVANGAQDLVAAAGATSQADTGNLSQPSKEQLQVASELSTKGTQTKHVSNPSSRTRTKVQMQGVAIGRAVDLTTLEGYEDLIDELENVFEIKGELREMNKWSVIFTDDENDMMLVGDDPWPEFCKMVKRIFIYSSEEVKKMSSKSKLVSPSSLDSLDSERKTES 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35638917 35642375 + Tan0019344.1 Tan06g1746 756450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1746 697 FunFam Auxin response factor 286 357 - -
Tan06g1746 697 Pfam Auxin response factor 251 330 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan06g1746 697 SUPERFAMILY CAD & PB1 domains 583 663 - -
Tan06g1746 697 Gene3D - 583 675 - -
Tan06g1746 697 MobiDBLite consensus disorder prediction 568 588 - -
Tan06g1746 697 CDD B3_DNA 123 225 IPR003340 GO:0003677(InterPro)
Tan06g1746 697 Gene3D - 287 358 - -
Tan06g1746 697 FunFam Auxin response factor 582 675 - -
Tan06g1746 697 MobiDBLite consensus disorder prediction 99 121 - -
Tan06g1746 697 ProSiteProfiles PB1 domain profile. 587 679 IPR053793 -
Tan06g1746 697 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677(InterPro)
Tan06g1746 697 Gene3D - 122 227 IPR015300 -
Tan06g1746 697 MobiDBLite consensus disorder prediction 468 490 - -
Tan06g1746 697 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
Tan06g1746 697 FunFam Auxin response factor 123 227 - -
Tan06g1746 697 Pfam AUX/IAA family 574 623 IPR033389 -
Tan06g1746 697 Pfam AUX/IAA family 633 672 IPR033389 -
Tan06g1746 697 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
Tan06g1746 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 677 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan06g1746 697 MobiDBLite consensus disorder prediction 673 697 - -
Tan06g1746 697 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1746 Tan-Chr6:35638917 Tan07g1529 Tan-Chr7:66539205 2.80E-200 dispersed
Tan06g1746 Tan-Chr6:35638917 Tan01g1062 Tan-Chr1:10454652 8.40E-213 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27791 PF02309 AUX_IAA 4.00E-11 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1746 K14486 - csv:101205805 1190.64