Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1802 ATGACCACAAACTCCCACCATTCTCAACTCACCACCACCACTTCCTCTGCCTCTTCCTCTACCTCCTCGAGCAAAAATGGTCGAAAAAGGCAGAGGAGTACGACGACAAGCAGCACAGAGAGCGAGAGCGAATCAACTCACTCGACGACGAAGTACAGAGGGGTTCGCTTAAGAGCGTGGGGAAAATGGGTGTCGGAAATAAGAGAGCCAAGGAAGAAATCTAGGATATGGCTTGGCACATACCCTACGGCGGAGATGGCAGCGCGTGCACACGACGTGGCGGCGCTCGCCATCAAAGGTCGCAACGTATTTCTCAACTTTCCTGAACTCAAACACCAACTCCCTCGCCCTATCTCTCTCTCTGCCAAGGACATTCAGGCGGCTGCCGCAGAGGCGGCCACCCTCAAAACACCAATGACAGAGGAAGAAGAGGAGGAATTGAGTCACTCCGAAATAAGGTCGTCTGAAGAAGAGACCTGGTTTGATTTACCAGATCTTGTCGTACGAGGAAGGAGTGATGGGATGTTGTTGGGTTATGATTCTCCATGGCAGTTTGGTGGAGATCAGGAACATTCATGGCACTGGGACTGTTATTCTCATACTATTTTTCCTGGTTGA 618 50.97 MTTNSHHSQLTTTTSSASSSTSSSKNGRKRQRSTTTSSTESESESTHSTTKYRGVRLRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGRNVFLNFPELKHQLPRPISLSAKDIQAAAAEAATLKTPMTEEEEEELSHSEIRSSEEETWFDLPDLVVRGRSDGMLLGYDSPWQFGGDQEHSWHWDCYSHTIFPG 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41488456 41489340 - Tan0007472.1 Tan06g1802 756506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1802 205 CDD AP2 51 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1802 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 155 IPR051032 -
Tan06g1802 205 MobiDBLite consensus disorder prediction 136 155 - -
Tan06g1802 205 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1802 205 SMART rav1_2 51 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1802 205 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1802 205 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1802 205 MobiDBLite consensus disorder prediction 1 51 - -
Tan06g1802 205 Pfam AP2 domain 50 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan06g1802 205 MobiDBLite consensus disorder prediction 137 155 - -
Tan06g1802 205 FunFam Ethylene-responsive transcription factor 2 50 109 - -
Tan06g1802 205 SUPERFAMILY DNA-binding domain 51 108 IPR016177 GO:0003677(InterPro)
Tan06g1802 205 MobiDBLite consensus disorder prediction 1 45 - -
Tan06g1802 205 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1802 Tan-Chr6:41488456 Tan10g0052 Tan-Chr10:874216 4.40E-37 dispersed
Tan06g1802 Tan-Chr6:41488456 Tan01g3934 Tan-Chr1:104234861 7.80E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27794 PF00847 AP2 1.80E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1802 - - - 0.0