Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1828 ATGGCCGGAATAGTCGCCGGCGAAATCGACAGCCCGCCGGCTGTAGCTCTACTGGACTTTGTTCGCGATGTCGTTCGGATTTCGGCGGGGACAAATAGTGGAGAGGTTTTCAAGAGGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGATTTTAATGGCGTCCAATTTCGACCTCTTTATGCATCTTGCTCTTCTTCTTTTTCTGCTTCTTCTTGTGGGGCTGTTACTGGGAGGGATTCGTCTCCGAGTCCGTGGCTGTGCGATTTAGTGGCGGCATTGAAGGATGCTAAGCGCCTCGTTTTCATCGCCTCGACTTTCCGGTCCTGTAGTTCTTCTTCTGAGGAAGTTGCCAAGAAGATACTCTACCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCGTTGGTTAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCAGAAAAATATGGCTCTCTGACTGCAATTCCGCCGTCGGTTATTCAATCTCAGTTACTAAAGAAAAACATGGATCTGTTGAATCTGAACAACTTGACTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCACGAGATTACCGTGAAATTTGATGCATTTCCAAATTGTAGAGGCTTGATGAATAGTGGTGTGAATCAGCTGATTTTCAAAGGACTTGGGAAGAAACTTCCATCCTTCTCAGAGGCTTGTTCTGATGGACAGGATGACTCTACCAGAAAGAGTGGAGACCAGGTGGAGAACTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCTACAGGACAGACGTACGAGAGATCTTATGTTCAAAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGACGCTCACCCCAAATTATGTACTGCGAAGTCTTATTAGTCAATGGTGTGTTAATCACAATATTGAGCAACCAACAGGATTGACCAATGGAAAGATCAAAAAGTGTGACGGATCGTACCGTGATGTGTGTGAAGAGATGGCAGCCATTGAAACTCTGGTCTGCAAGCTAAATAGCCATTCGATCGAGGAGCGGAGAGCTTCTGTGACTGAACTTCGATCTCTATCGAAAAGAAGCACAGATAATAGAATACTGATAGCTGAAGCAGGAGCAATTCCAAATTTGGTCAATTTGTTAACTGCTGATGATGTTTTAATACAAGAAAATGCAGTCACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGACTAATTATGCTTGCTGGTGCAGTACCTTCAATTGTCCAAGTTCTGAGAGTTGGAAGCATGGAAGCGAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCCTCTGGGGCCATTCCGGCTCTTGTGGATTTACTTGAAAATGGAAACTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAACTTGTGTATTTATCAGGGGAATAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTTTTAAAGATGTTTATCGACTCGGTTAATTCTATGGTTGACGAAGCTCTCACGATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTGCTAATAGACCTGTTGAGGACCGGATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTTTATGTAAGCGAGATGCCGACAACCTTTCTTGCATAAGTAGGCTCGGCGCTGTGATTCCACTGACCGAGCTCGCCAAGAATGGCACAGAGAGAGCGAAAAGGAAGGCTACTTCACTGTTGGAGCATCTTCGAAAACTACAGCAGCTATAG 1983 44.43 MAGIVAGEIDSPPAVALLDFVRDVVRISAGTNSGEVFKRDCTDLVRRIVLLTHLFEEIRDFNGVQFRPLYASCSSSFSASSCGAVTGRDSSPSPWLCDLVAALKDAKRLVFIASTFRSCSSSSEEVAKKILYQFQCVTWKLEKALVNLPYDRFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVIQSQLLKKNMDLLNLNNLTDNFDVEENGVVDHEITVKFDAFPNCRGLMNSGVNQLIFKGLGKKLPSFSEACSDGQDDSTRKSGDQVENSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVCKLNSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPNLVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGNSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMFIDSVNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLSCISRLGAVIPLTELAKNGTERAKRKATSLLEHLRKLQQL 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43781369 43785286 + Tan0011246.1 Tan06g1828 756532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1828 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 503 545 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 354 IPR013083 -
Tan06g1828 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 CDD RING-Ubox_PUB 282 334 IPR045210 -
Tan06g1828 660 Pfam Armadillo/beta-catenin-like repeat 410 449 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 Pfam Armadillo/beta-catenin-like repeat 493 531 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 Coils Coil 640 660 - -
Tan06g1828 660 Pfam U-box domain 281 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan06g1828 660 MobiDBLite consensus disorder prediction 255 280 - -
Tan06g1828 660 SUPERFAMILY ARM repeat 371 654 IPR016024 -
Tan06g1828 660 FunFam RING-type E3 ubiquitin transferase 364 457 - -
Tan06g1828 660 Gene3D - 461 557 IPR011989 -
Tan06g1828 660 Gene3D - 558 659 IPR011989 -
Tan06g1828 660 SMART Ubox_2 284 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan06g1828 660 FunFam RING-type E3 ubiquitin transferase 458 558 - -
Tan06g1828 660 SUPERFAMILY RING/U-box 272 354 - -
Tan06g1828 660 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan06g1828 660 SMART arm_5 451 491 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 SMART arm_5 533 573 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 SMART arm_5 410 450 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 SMART arm_5 616 656 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 SMART arm_5 492 532 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 SMART arm_5 574 614 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 FunFam RING-type E3 ubiquitin transferase 278 354 - -
Tan06g1828 660 PANTHER U BOX DOMAIN-CONTAINING 36 656 - -
Tan06g1828 660 Coils Coil 156 176 - -
Tan06g1828 660 Gene3D - 362 459 IPR011989 -
Tan06g1828 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515(InterPro)
Tan06g1828 660 FunFam RING-type E3 ubiquitin transferase 560 659 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1828 Tan-Chr6:43781369 Tan11g1796 Tan-Chr11:19512702 2.90E-98 dispersed
Tan06g1828 Tan-Chr6:43781369 Tan04g1579 Tan-Chr4:25117845 2.50E-259 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1828 - - - 0.0