Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan06g1828 | ATGGCCGGAATAGTCGCCGGCGAAATCGACAGCCCGCCGGCTGTAGCTCTACTGGACTTTGTTCGCGATGTCGTTCGGATTTCGGCGGGGACAAATAGTGGAGAGGTTTTCAAGAGGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGATTTTAATGGCGTCCAATTTCGACCTCTTTATGCATCTTGCTCTTCTTCTTTTTCTGCTTCTTCTTGTGGGGCTGTTACTGGGAGGGATTCGTCTCCGAGTCCGTGGCTGTGCGATTTAGTGGCGGCATTGAAGGATGCTAAGCGCCTCGTTTTCATCGCCTCGACTTTCCGGTCCTGTAGTTCTTCTTCTGAGGAAGTTGCCAAGAAGATACTCTACCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCGTTGGTTAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCAGAAAAATATGGCTCTCTGACTGCAATTCCGCCGTCGGTTATTCAATCTCAGTTACTAAAGAAAAACATGGATCTGTTGAATCTGAACAACTTGACTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCACGAGATTACCGTGAAATTTGATGCATTTCCAAATTGTAGAGGCTTGATGAATAGTGGTGTGAATCAGCTGATTTTCAAAGGACTTGGGAAGAAACTTCCATCCTTCTCAGAGGCTTGTTCTGATGGACAGGATGACTCTACCAGAAAGAGTGGAGACCAGGTGGAGAACTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCTACAGGACAGACGTACGAGAGATCTTATGTTCAAAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGACGCTCACCCCAAATTATGTACTGCGAAGTCTTATTAGTCAATGGTGTGTTAATCACAATATTGAGCAACCAACAGGATTGACCAATGGAAAGATCAAAAAGTGTGACGGATCGTACCGTGATGTGTGTGAAGAGATGGCAGCCATTGAAACTCTGGTCTGCAAGCTAAATAGCCATTCGATCGAGGAGCGGAGAGCTTCTGTGACTGAACTTCGATCTCTATCGAAAAGAAGCACAGATAATAGAATACTGATAGCTGAAGCAGGAGCAATTCCAAATTTGGTCAATTTGTTAACTGCTGATGATGTTTTAATACAAGAAAATGCAGTCACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGACTAATTATGCTTGCTGGTGCAGTACCTTCAATTGTCCAAGTTCTGAGAGTTGGAAGCATGGAAGCGAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCCTCTGGGGCCATTCCGGCTCTTGTGGATTTACTTGAAAATGGAAACTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAACTTGTGTATTTATCAGGGGAATAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTTTTAAAGATGTTTATCGACTCGGTTAATTCTATGGTTGACGAAGCTCTCACGATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTGCTAATAGACCTGTTGAGGACCGGATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTTTATGTAAGCGAGATGCCGACAACCTTTCTTGCATAAGTAGGCTCGGCGCTGTGATTCCACTGACCGAGCTCGCCAAGAATGGCACAGAGAGAGCGAAAAGGAAGGCTACTTCACTGTTGGAGCATCTTCGAAAACTACAGCAGCTATAG | 1983 | 44.43 | MAGIVAGEIDSPPAVALLDFVRDVVRISAGTNSGEVFKRDCTDLVRRIVLLTHLFEEIRDFNGVQFRPLYASCSSSFSASSCGAVTGRDSSPSPWLCDLVAALKDAKRLVFIASTFRSCSSSSEEVAKKILYQFQCVTWKLEKALVNLPYDRFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVIQSQLLKKNMDLLNLNNLTDNFDVEENGVVDHEITVKFDAFPNCRGLMNSGVNQLIFKGLGKKLPSFSEACSDGQDDSTRKSGDQVENSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVCKLNSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPNLVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGNSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMFIDSVNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLSCISRLGAVIPLTELAKNGTERAKRKATSLLEHLRKLQQL | 660 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 43781369 | 43785286 | + | Tan0011246.1 | Tan06g1828 | 756532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan06g1828 | 660 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 503 | 545 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 354 | IPR013083 | - | |
Tan06g1828 | 660 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 462 | 504 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | CDD | RING-Ubox_PUB | 282 | 334 | IPR045210 | - | |
Tan06g1828 | 660 | Pfam | Armadillo/beta-catenin-like repeat | 410 | 449 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | Pfam | Armadillo/beta-catenin-like repeat | 493 | 531 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | Coils | Coil | 640 | 660 | - | - | |
Tan06g1828 | 660 | Pfam | U-box domain | 281 | 352 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan06g1828 | 660 | MobiDBLite | consensus disorder prediction | 255 | 280 | - | - | |
Tan06g1828 | 660 | SUPERFAMILY | ARM repeat | 371 | 654 | IPR016024 | - | |
Tan06g1828 | 660 | FunFam | RING-type E3 ubiquitin transferase | 364 | 457 | - | - | |
Tan06g1828 | 660 | Gene3D | - | 461 | 557 | IPR011989 | - | |
Tan06g1828 | 660 | Gene3D | - | 558 | 659 | IPR011989 | - | |
Tan06g1828 | 660 | SMART | Ubox_2 | 284 | 347 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan06g1828 | 660 | FunFam | RING-type E3 ubiquitin transferase | 458 | 558 | - | - | |
Tan06g1828 | 660 | SUPERFAMILY | RING/U-box | 272 | 354 | - | - | |
Tan06g1828 | 660 | ProSiteProfiles | U-box domain profile. | 280 | 354 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan06g1828 | 660 | SMART | arm_5 | 451 | 491 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | SMART | arm_5 | 533 | 573 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | SMART | arm_5 | 410 | 450 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | SMART | arm_5 | 616 | 656 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | SMART | arm_5 | 492 | 532 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | SMART | arm_5 | 574 | 614 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | FunFam | RING-type E3 ubiquitin transferase | 278 | 354 | - | - | |
Tan06g1828 | 660 | PANTHER | U BOX DOMAIN-CONTAINING | 36 | 656 | - | - | |
Tan06g1828 | 660 | Coils | Coil | 156 | 176 | - | - | |
Tan06g1828 | 660 | Gene3D | - | 362 | 459 | IPR011989 | - | |
Tan06g1828 | 660 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 421 | 463 | IPR000225 | GO:0005515(InterPro) | |
Tan06g1828 | 660 | FunFam | RING-type E3 ubiquitin transferase | 560 | 659 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g1828 | Tan-Chr6:43781369 | Tan11g1796 | Tan-Chr11:19512702 | 2.90E-98 | dispersed | |
Tan06g1828 | Tan-Chr6:43781369 | Tan04g1579 | Tan-Chr4:25117845 | 2.50E-259 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan06g1828 | - | - | - | 0.0 |