Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1845 ATGGAGTTTTTCACAAAATCGAAAGAAGAAGAAGAGGAGGAGGAAGAAGAAGAAGAAATTCGGAGTGTTGCATGCGATTTCTTCCCAAATTCACACTGTAATAAGAACCAACAGAAATGGGTTGAAGATCAGGGTACAAATCAGCAGCCTCTCATGGACTTATCCCTCCGAATCGACTCCAACAACAACAACAATAACAACAACAATGGGTTTTCTGTTGAGAGAGAGCACATGTTCGACAAAGTGGTCACTCCAAGCGATGTGGGAAAATTAAACCGTCTAGTCATCCCAAAGCAACACGCCGAAAAATACTTCCCTTTGGACTCAACCACCAACGACAAAGGCCTCATCTTAAACTTCGAGGACCGCAACGGAAAGCCCTGGAGGTTTCGTTACTCTTACTGGAACAGCAGCCAGAGTTACGTGATGACTAAAGGCTGGAGCCGTTTTGTCAAAGACAAGAAATTGGATGCAGGCGACGTCGTTTCCTTCCAGCGTGGCGTCGGCGATTCCGCTAAGGACCGCCTTTTCATCGACTGGCGCCGCCGTCCCGATGCCCCATCTCGCCCTCACCATCATCCTCTCCTCCTCCTCCCACAGTCTCTCCGGTGGGGCTCTGGCAGTGGCCGTCAATTTACTCTTCCACCACCTCCTCCAACTCATCCGACGCAGTACCCCAGACGAACCCACCCTAATTACTCCAATAATCTCTATCCCAATTACGCCTTTGAAATCCCCAATTTTGGGACGCCTACCAATAATCATTCTTCCAATATGTATTATTTTCGACCTACCTCTATTTCCTCTTCCTCTTCCTCCTCTCTCTATCGGATCGGGAATGGGGATGAGATTGTTGTTAATAAGGAAGGCTCTTCCATGGGGATTCACAAAGGCGACTCCGGCGCTGCCACCGCGGCCAAACGACTCCGACTGTTTGGAGTGAATATGGAGTGTGCTGCAGCCGAGGGAGAAGGAGGAGAAGAGGATCTCTCAAACGGCGGCGTTTCCAGGAGAGGGAAAGAGCCCTTGTCGTTGAATTGGGATTTACTTTAA 1053 49.19 MEFFTKSKEEEEEEEEEEEIRSVACDFFPNSHCNKNQQKWVEDQGTNQQPLMDLSLRIDSNNNNNNNNNGFSVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTTNDKGLILNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFQRGVGDSAKDRLFIDWRRRPDAPSRPHHHPLLLLPQSLRWGSGSGRQFTLPPPPPTHPTQYPRRTHPNYSNNLYPNYAFEIPNFGTPTNNHSSNMYYFRPTSISSSSSSSLYRIGNGDEIVVNKEGSSMGIHKGDSGAATAAKRLRLFGVNMECAAAEGEGGEEDLSNGGVSRRGKEPLSLNWDLL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44839824 44841738 - Tan0019031.1 Tan06g1845 756549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1845 350 Gene3D - 72 194 IPR015300 -
Tan06g1845 350 SUPERFAMILY DNA-binding pseudobarrel domain 76 183 IPR015300 -
Tan06g1845 350 MobiDBLite consensus disorder prediction 322 350 - -
Tan06g1845 350 CDD B3_DNA 77 166 IPR003340 GO:0003677(InterPro)
Tan06g1845 350 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 316 IPR044800 GO:0003700(InterPro)
Tan06g1845 350 ProSiteProfiles B3 DNA-binding domain profile. 79 184 IPR003340 GO:0003677(InterPro)
Tan06g1845 350 FunFam B3 domain-containing protein 72 193 - -
Tan06g1845 350 SMART B3_2 79 184 IPR003340 GO:0003677(InterPro)
Tan06g1845 350 Pfam B3 DNA binding domain 79 183 IPR003340 GO:0003677(InterPro)
Tan06g1845 350 Coils Coil 1 26 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1185 Tan-Chr1:11562566 Tan06g1845 Tan-Chr6:44839824 7.90E-59 dispersed
Tan01g1186 Tan-Chr1:11562566 Tan06g1845 Tan-Chr6:44839824 7.90E-59 dispersed
Tan06g1845 Tan-Chr6:44839824 Tan09g0896 Tan-Chr9:60445322 1.50E-24 dispersed
Tan07g0156 Tan-Chr7:3960967 Tan06g1845 Tan-Chr6:44839824 7.90E-59 transposed
Tan08g1679 Tan-Chr8:67117841 Tan06g1845 Tan-Chr6:44839824 1.10E-41 transposed
Tan11g1931 Tan-Chr11:29672929 Tan06g1845 Tan-Chr6:44839824 6.70E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27795 PF02362 B3 3.90E-29 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1845 K09287 - csv:101221141 389.037