Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1920 ATGTTGGATTATGAATGGGGATCAACGAACCCGCCGCCGATCATCCTCTCCGGCGAAGAATCCGAACCCGCTTTCAACCCGGATACGACTCACTCTCACCACTTACCCACTTTCATCGACCACCACCACAACACTTTCCTCTCGCCGCCGTCCACGGCGGCGGCGGCGTTCAGCTCGCACTTTGGCGGGTTCTTCGACAACCCACAGAACTACACAATGGGTCCTTCTTCTCATCATTTTGATAGTGTGGCCGCCGCCCTCCACGGCGGCGACGGAGGGGAGTTTTTGGTGGTGCCGAAGAGTGAGGAGGTTTGCCGGAGTATGACGGCGGGTGCGGTGGATTTTGCGGCAAGGATAGGGCTGAATTTGGGGGGGAGGACGTACTTCTCGTCGTCGGAGGAGGAGTTTGTGAACCGGTTGTACCGGAGGACAAGAACAGGCGGCGAACCGGGTTCAGGGAACTGGACGGCTCGGTGCCAAGCGGAGGGGTGTAATGCGGATCTGAGCCAAGCCAAGCACTACCACCGACGGCATAAGGTTTGTGAGTTTCATTCTAAAGCTTCCACCGTCATCGCCGCCGGGTTGACTCAGAGGTTCTGTCAGCAATGCAGCAGGTTTCATGTGTTGACGGAGTTCGACAATGGAAAACGGAGTTGTCGGAAAAGATTGGCGGACCACAACCGTCGACGGCGGAAGACTCAGCAATCCAATCAAGGAAGCCCCAAGTCGCAGCCGCTTGAAACTACCACTTCTTCAACAGATTCTGCTGCAAGGTCAGCAATGGAGTCAACCGGACAGTCAGCGTGGTCGGTAACAGTGGCAGTATCTCCGACAAGAATGTCATTGGAGTGCCTTAACCAACGGCCATATTAG 873 55.9 MLDYEWGSTNPPPIILSGEESEPAFNPDTTHSHHLPTFIDHHHNTFLSPPSTAAAAFSSHFGGFFDNPQNYTMGPSSHHFDSVAAALHGGDGGEFLVVPKSEEVCRSMTAGAVDFAARIGLNLGGRTYFSSSEEEFVNRLYRRTRTGGEPGSGNWTARCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHVLTEFDNGKRSCRKRLADHNRRRRKTQQSNQGSPKSQPLETTTSSTDSAARSAMESTGQSAWSVTVAVSPTRMSLECLNQRPY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 57087677 57093059 + Tan0000624.1 Tan06g1920 756624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1920 290 MobiDBLite consensus disorder prediction 1 26 - -
Tan06g1920 290 MobiDBLite consensus disorder prediction 222 269 - -
Tan06g1920 290 FunFam Squamosa promoter-binding-like protein 14 151 220 - -
Tan06g1920 290 SUPERFAMILY SBT domain 157 237 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan06g1920 290 Gene3D - 151 220 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan06g1920 290 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677(InterPro)
Tan06g1920 290 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 55 268 IPR044817 GO:0003677(InterPro)
Tan06g1920 290 MobiDBLite consensus disorder prediction 236 269 - -
Tan06g1920 290 Pfam SBP domain 159 232 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4381 Tan-Chr1:108805977 Tan06g1920 Tan-Chr6:57087677 5.70E-29 dispersed
Tan05g3315 Tan-Chr5:85054499 Tan06g1920 Tan-Chr6:57087677 2.40E-25 dispersed
Tan06g1920 Tan-Chr6:57087677 Tan09g2013 Tan-Chr9:70815040 2.40E-28 dispersed
Tan06g1920 Tan-Chr6:57087677 Tan03g2491 Tan-Chr3:78340959 3.70E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27800 PF03110 SBP 4.40E-31 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1920 - - - 0.0