Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g1920 ATGTTGGATTATGAATGGGGATCAACGAACCCGCCGCCGATCATCCTCTCCGGCGAAGAATCCGAACCCGCTTTCAACCCGGATACGACTCACTCTCACCACTTACCCACTTTCATCGACCACCACCACAACACTTTCCTCTCGCCGCCGTCCACGGCGGCGGCGGCGTTCAGCTCGCACTTTGGCGGGTTCTTCGACAACCCACAGAACTACACAATGGGTCCTTCTTCTCATCATTTTGATAGTGTGGCCGCCGCCCTCCACGGCGGCGACGGAGGGGAGTTTTTGGTGGTGCCGAAGAGTGAGGAGGTTTGCCGGAGTATGACGGCGGGTGCGGTGGATTTTGCGGCAAGGATAGGGCTGAATTTGGGGGGGAGGACGTACTTCTCGTCGTCGGAGGAGGAGTTTGTGAACCGGTTGTACCGGAGGACAAGAACAGGCGGCGAACCGGGTTCAGGGAACTGGACGGCTCGGTGCCAAGCGGAGGGGTGTAATGCGGATCTGAGCCAAGCCAAGCACTACCACCGACGGCATAAGGTTTGTGAGTTTCATTCTAAAGCTTCCACCGTCATCGCCGCCGGGTTGACTCAGAGGTTCTGTCAGCAATGCAGCAGGTTTCATGTGTTGACGGAGTTCGACAATGGAAAACGGAGTTGTCGGAAAAGATTGGCGGACCACAACCGTCGACGGCGGAAGACTCAGCAATCCAATCAAGGAAGCCCCAAGTCGCAGCCGCTTGAAACTACCACTTCTTCAACAGATTCTGCTGCAAGGTCAGCAATGGAGTCAACCGGACAGTCAGCGTGGTCGGTAACAGTGGCAGTATCTCCGACAAGAATGTCATTGGAGTGCCTTAACCAACGGCCATATTAG 873 55.9 MLDYEWGSTNPPPIILSGEESEPAFNPDTTHSHHLPTFIDHHHNTFLSPPSTAAAAFSSHFGGFFDNPQNYTMGPSSHHFDSVAAALHGGDGGEFLVVPKSEEVCRSMTAGAVDFAARIGLNLGGRTYFSSSEEEFVNRLYRRTRTGGEPGSGNWTARCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHVLTEFDNGKRSCRKRLADHNRRRRKTQQSNQGSPKSQPLETTTSSTDSAARSAMESTGQSAWSVTVAVSPTRMSLECLNQRPY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 57087677 57093059 + Tan0000624.1 Tan06g1920 756624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g1920 290 MobiDBLite consensus disorder prediction 1 26 - -
Tan06g1920 290 MobiDBLite consensus disorder prediction 222 269 - -
Tan06g1920 290 FunFam Squamosa promoter-binding-like protein 14 151 220 - -
Tan06g1920 290 SUPERFAMILY SBT domain 157 237 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan06g1920 290 Gene3D - 151 220 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan06g1920 290 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677(InterPro)
Tan06g1920 290 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 55 268 IPR044817 GO:0003677(InterPro)
Tan06g1920 290 MobiDBLite consensus disorder prediction 236 269 - -
Tan06g1920 290 Pfam SBP domain 159 232 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g1920 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4381 Tan-Chr1:108805977 Tan06g1920 Tan-Chr6:57087677 5.70E-29 dispersed
Tan05g3315 Tan-Chr5:85054499 Tan06g1920 Tan-Chr6:57087677 2.40E-25 dispersed
Tan06g1920 Tan-Chr6:57087677 Tan09g2013 Tan-Chr9:70815040 2.40E-28 dispersed
Tan06g1920 Tan-Chr6:57087677 Tan03g2491 Tan-Chr3:78340959 3.70E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g2345 . 181 1008 SBP-box Gene Family AT2G47070 54.8 5.7e-239 824.7
Tan04g2346 . 181 1008 SBP-box Gene Family AT2G47070 54.8 5.7e-239 824.7
Tan04g2345 . 25 1008 SBP-box Gene Family AT3G60030 54.5 9.0e-279 957.2
Tan04g2346 . 25 1008 SBP-box Gene Family AT3G60030 54.5 9.0e-279 957.2
Tan06g1510 . 26 163 SBP-box Gene Family AT5G50570 55.9 7.1e-38 155.6
Tan06g1920 . 90 206 SBP-box Gene Family AT1G02065 66.1 4.1e-37 152.5
Tan04g2345 . 181 1008 SBP-box Gene Family AT2G47070 54.8 5.7e-239 824.7
Tan04g2346 . 181 1008 SBP-box Gene Family AT2G47070 54.8 5.7e-239 824.7
Tan06g1920 . 90 206 SBP-box Gene Family AT1G02065 66.1 4.1e-37 152.5
Tan04g2345 . 25 1008 SBP-box Gene Family AT3G60030 54.5 9.0e-279 957.2
Tan04g2346 . 25 1008 SBP-box Gene Family AT3G60030 54.5 9.0e-279 957.2
Tan06g1510 . 26 163 SBP-box Gene Family AT5G50570 55.9 7.1e-38 155.6
Tan06g1510 . 26 163 SBP-box Gene Family AT5G50670 55.9 7.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009074 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27800 PF03110 SBP 4.40E-31 No_clan Tan TF