Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan06g2001 ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTTCCCACCATATTTCTTCACTTTCTCTCTCTTCTCGACATCCTGAAACGCCTAATTCTGTCCCTCTTCCGCCTCCTCGGCCTGCCGGAATTTCTCCACTCCGACGCCGCCTTCTCGCCGGAGCTTCGATTCCCCCTGAACCCGCCCGCCTCCGCCGTACTCCTCCGCGAATTCCTCCCCGTGGTCAAATTCTCGGATCTCCCCCAGGCGTCGGAGCCGGCGGAGAGCTGCGCCGTGTGCCTGTACGAGTTCGAGGGGGCGGAGGAGATCCGGTGGTTAACGAACTGCAAGCACATATTCCACAGAGGCTGTGTGGACCGTTGGATGGATCACGATCAGAAGACGTGTCCGCTTTGTAGAACGCCGTTTGTGCCTGATGGGATGATGGACGAGTTCAATCAACGGCTCTGGGCCGCTTCTGGAATTGCTGAGTTTGATTCTGAGTTCAACTCGAAACTTAAATGGTACCTCAAGAAAAATGGAAATCATTATAGAGAAGATGAAGAGAAATTGTGA 549 54.28 MGFPVGCTEVFFPTIFLHFLSLLDILKRLILSLFRLLGLPEFLHSDAAFSPELRFPLNPPASAVLLREFLPVVKFSDLPQASEPAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSKLKWYLKKNGNHYREDEEKL 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 64434675 64436182 + Tan0020914.1 Tan06g2001 756705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan06g2001 182 SMART ring_2 88 130 IPR001841 -
Tan06g2001 182 FunFam RING-H2 finger protein ATL73 66 138 - -
Tan06g2001 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 136 IPR013083 -
Tan06g2001 182 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
Tan06g2001 182 SUPERFAMILY RING/U-box 73 137 - -
Tan06g2001 182 PANTHER RING ZINC FINGER PROTEIN-RELATED 10 141 - -
Tan06g2001 182 Pfam Ring finger domain 87 131 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1648 Tan-Chr5:44386827 Tan06g2001 Tan-Chr6:64434675 9.30E-34 dispersed
Tan06g2001 Tan-Chr6:64434675 Tan09g1238 Tan-Chr9:64747133 4.00E-13 dispersed
Tan05g1031 Tan-Chr5:8565663 Tan06g2001 Tan-Chr6:64434675 9.00E-11 transposed
Tan07g0137 Tan-Chr7:3758201 Tan06g2001 Tan-Chr6:64434675 1.00E-12 transposed
Tan03g2086 Tan-Chr3:75723132 Tan06g2001 Tan-Chr6:64434675 6.70E-11 transposed
Tan06g2001 Tan-Chr6:64434675 Tan07g1616 Tan-Chr7:67566744 8.50E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan06g2001 K16281 - csv:101220424 264.233